View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19932_low_28 (Length: 355)
Name: NF19932_low_28
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19932_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 36 - 340
Target Start/End: Original strand, 800635 - 800941
Alignment:
| Q |
36 |
ctcattctcaatgtcatttaacatacatgttgaagttgaagcttaaagaaagatttgatccaaaatggaaacaaaatttggtggaacaata--atataat |
133 |
Q |
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| T |
800635 |
ctcattctcaatgtcatttaacatacatgttgaagttgaagcttaaagaaagatttgatccaaaatggaaacaaaatttggtggaacaatataatataat |
800734 |
T |
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| Q |
134 |
aacattcacaaactataagagttctgatttgccatcatctgatcataaagcaaaggtggaaccccaacttccactgttccctctagcatttgagtcactt |
233 |
Q |
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| T |
800735 |
aacattcacaaactataagagttctgatttgccatcatctgatcataaagcaaaggtggaaccccaacttccactgttccctctagcatttgagtcactt |
800834 |
T |
|
| Q |
234 |
tcttcattgaaggtctaagagttgggtttggatgaagacaccataatccaaccaaagccatttgctcaatcctcttgaaatcatttattacttctaagtc |
333 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||| |
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| T |
800835 |
tcttcattgaaggtctaagagttgggtttggatgaagacaccataatccaaccaaagccatttgctcaaacctcttgaaatcattgagtacttctaagtc |
800934 |
T |
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| Q |
334 |
atgactt |
340 |
Q |
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||||||| |
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| T |
800935 |
atgactt |
800941 |
T |
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