View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19932_low_33 (Length: 308)

Name: NF19932_low_33
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19932_low_33
NF19932_low_33
[»] chr2 (39 HSPs)
chr2 (19-293)||(12006324-12006598)
chr2 (19-225)||(11987693-11987899)
chr2 (19-228)||(12012758-12012964)
chr2 (19-293)||(12019094-12019391)
chr2 (19-191)||(9284396-9284569)
chr2 (20-191)||(9291686-9291857)
chr2 (20-179)||(9315795-9315954)
chr2 (20-178)||(9274277-9274435)
chr2 (24-192)||(9328363-9328530)
chr2 (20-179)||(9320758-9320917)
chr2 (20-179)||(9061366-9061522)
chr2 (20-163)||(8573733-8573876)
chr2 (20-162)||(10335649-10335791)
chr2 (20-186)||(10352878-10353044)
chr2 (20-163)||(10347553-10347699)
chr2 (20-163)||(10371626-10371772)
chr2 (20-163)||(10341141-10341287)
chr2 (20-141)||(9065821-9065942)
chr2 (61-184)||(7115917-7116040)
chr2 (88-191)||(9294915-9295019)
chr2 (238-293)||(9291563-9291618)
chr2 (238-293)||(12012999-12013054)
chr2 (60-141)||(9364442-9364523)
chr2 (19-74)||(7115851-7115906)
chr2 (20-131)||(8579712-8579823)
chr2 (238-293)||(11987937-11987992)
chr2 (20-71)||(16268952-16269003)
chr2 (240-293)||(9364242-9364295)
chr2 (238-293)||(9315644-9315699)
chr2 (238-293)||(9320596-9320651)
chr2 (238-293)||(10352735-10352790)
chr2 (238-280)||(9274200-9274242)
chr2 (238-293)||(9066083-9066138)
chr2 (251-293)||(8573993-8574035)
chr2 (238-293)||(19393261-19393321)
chr2 (238-284)||(9284657-9284703)
chr2 (263-293)||(9328225-9328255)
chr2 (238-275)||(9295107-9295144)
chr2 (238-279)||(10341038-10341079)
[»] scaffold0667 (2 HSPs)
scaffold0667 (20-179)||(4229-4385)
scaffold0667 (238-293)||(4070-4125)
[»] chr8 (2 HSPs)
chr8 (20-133)||(41966915-41967028)
chr8 (238-293)||(41967184-41967239)
[»] chr1 (9 HSPs)
chr1 (20-122)||(29453511-29453613)
chr1 (20-123)||(29467987-29468090)
chr1 (20-123)||(29423097-29423200)
chr1 (238-290)||(29453747-29453799)
chr1 (239-293)||(29443774-29443828)
chr1 (238-293)||(29422938-29422993)
chr1 (20-122)||(29443528-29443630)
chr1 (191-228)||(29443693-29443730)
chr1 (238-273)||(29468238-29468273)
[»] chr3 (2 HSPs)
chr3 (20-182)||(37462238-37462403)
chr3 (238-293)||(37462095-37462150)
[»] chr7 (3 HSPs)
chr7 (20-119)||(45230244-45230343)
chr7 (20-121)||(45237760-45237861)
chr7 (20-94)||(45243531-45243605)
[»] chr4 (3 HSPs)
chr4 (20-113)||(26574700-26574793)
chr4 (238-289)||(26574525-26574576)
chr4 (60-129)||(561009-561078)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 12006324 - 12006598
Alignment:
Q  19 gtttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcct 118  Q
    |||||||||||||||||||||||| |||||| |||  |||| |||||||| |||||||||||||| |||||||||||||||||||||||||  || ||||    
T  12006324 gtttggtatgatttgaagagtgaagaagttaattacattgagggaattccaaatttcgatgaagcgatgatttgtgttggaagtcttgtactgccttcct 12006423  T
Q  119 tccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttcttattgattatgtataaattaatatcaattcaatggac 218  Q
    |||||||||| |||| || |||||||| ||||| | ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12006424 tccctgttgagaattgtacgaagaaggagaatcgtacaagcaagagcaagagaaggtacttcttattgattatgtataagttaatatcaattcaatggac 12006523  T
Q  219 ccatcatatgttaatgtatttgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 293  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12006524 ccatcatatgttaatgtatttgaattcttattttaggacaaggattctctaattactttgaagtctctacctttg 12006598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 11987693 - 11987899
Alignment:
Q  19 gtttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcct 118  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11987693 gtttggtatgatttgaagagtgaacaatttagttatgttgacggaattcctaaattcgatgaagctatgatttgtgttggaagtcttgtaccaccctcct 11987792  T
Q  119 tccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttcttattgattatgtataaattaatatcaattcaatggac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11987793 tccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttcttattgattatgtataagttaatatcaattcaatggac 11987892  T
Q  219 ccatcat 225  Q
    |||||||    
T  11987893 ccatcat 11987899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 12012758 - 12012964
Alignment:
Q  19 gtttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcct 118  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12012758 gtttggtatgatttgaagagt---caagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcct 12012854  T
Q  119 tccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttcttattgattatgtataaattaatatcaattcaatggac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12012855 tccctgttgataattctaggaagaaggggaatcattcaagcaagagcaagagaaggtacttcttattgattatgtataagttaatatcaattcaatggac 12012954  T
Q  219 ccatcatatg 228  Q
    ||||||||||    
T  12012955 ccatcatatg 12012964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 12019094 - 12019391
Alignment:
Q  19 gtttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcct 118  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  12019094 gtttggtatgatttgaagagtcagcaagttagttatgttgaaggaattcctaatttcgatgaagccatgatttgtgttggaagtcttgtaccaccttcct 12019193  T
Q  119 tccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttcttattgattatgtataaattaatat-caattcaatgga 217  Q
    | |||| |||| ||  |   | ||||| ||||| | |||| |||| ||||||||||||||||||||||||||||||||| |||| || ||||||||||||    
T  12019194 tacctgctgatgataatcatacgaaggagaatcgtacaagaaagagcaagagaaggtacttcttattgattatgtataagttaacatccaattcaatgga 12019293  T
Q  218 cccatca----------------------tatgttaatgtatttgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 293  Q
    |||||||                      |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12019294 cccatcatatgatatatgtagttaaactctatgttaatgtattggaattcttattataggacaaggattctctaattactttgaagtctctacctttg 12019391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 9284396 - 9284569
Alignment:
Q  19 gtttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcct 118  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||| ||||    
T  9284396 gtttggtatgatttgaagagtgagcaagttatttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttgtgccaccttcct 9284495  T
Q  119 tccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttc-ttattgattat 191  Q
    ||||||||||||||||||| ||||||| ||||| || |||||||| |||||||||||||||| |||||||||||    
T  9284496 tccctgttgataattctagtaagaaggagaatcgtttaagcaagagcaagagaaggtacttctttattgattat 9284569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 9291857 - 9291686
Alignment:
Q  20 tttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcctt 119  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||| |||||    
T  9291857 tttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttctaccaccttcctt 9291758  T
Q  120 ccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttcttattgattat 191  Q
    |||||||||||||| ||||||||||| ||||||| | | |||||  |||| | |||||||||||||||||||    
T  9291757 ccctgttgataattgtaggaagaaggagaatcatacgaacaagagaaagaaacggtacttcttattgattat 9291686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 9315954 - 9315795
Alignment:
Q  20 tttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcctt 119  Q
    |||||| ||| |||| |||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||| |||||    
T  9315954 tttggtgtgacttgatgagtgaacaagttatttatgttgaaggaatttctaatttggatgaagctatgatttgtgttgaaagtcttgtaccaccttcctt 9315855  T
Q  120 ccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtactt 179  Q
    |||||||||| ||| ||||||||||| ||||||| ||||||||| |||||||||||||||    
T  9315854 ccctgttgattattgtaggaagaaggagaatcatacaagcaagaacaagagaaggtactt 9315795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 9274435 - 9274277
Alignment:
Q  20 tttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcctt 119  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||| ||| | |||| ||||| ||||||||| ||||||||||||||||    
T  9274435 tttggtatgatttgaagagtgaacaagttagttttgttaaaggaattcctaacttcaatggaactattatttgggttggaagttttgtaccaccctcctt 9274336  T
Q  120 ccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtact 178  Q
    |||||||||||||||||||||||||| ||||||| ||||||||| ||||| ||||||||    
T  9274335 ccctgttgataattctaggaagaaggagaatcatacaagcaagagcaagaaaaggtact 9274277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 9328530 - 9328363
Alignment:
Q  24 gtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctccttccct 123  Q
    ||||||||| | ||||| |||||||||||||||||||||||||||| ||||| |||| | |||| ||| ||||||||||||||||||||| |||||||||    
T  9328530 gtatgattttaggagtgcacaagttagttatgttgaaggaattcctgatttccatgatgttatgttttctgttggaagtcttgtaccaccttccttccct 9328431  T
Q  124 gttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttcttattgattatg 192  Q
    |||||||||||||||||||||| ||||| | ||||||||| |||||||||||||||||| |||||||||    
T  9328430 gttgataattctaggaagaaggagaatcgtacaagcaagagcaagagaaggtacttctt-ttgattatg 9328363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 9320917 - 9320758
Alignment:
Q  20 tttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcctt 119  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| || |||| ||||||||||||||||||| ||||| |||||    
T  9320917 tttggtatgatttgaagagtgcacaagttagttatgttgaaggaattcctgatttccatggagttatgttttgtgttggaagtcttgtcccaccttcctt 9320818  T
Q  120 ccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtactt 179  Q
    ||||||||||||||||| |||||||| ||||| | ||||||||| || ||||||||||||    
T  9320817 ccctgttgataattctaagaagaaggagaatcgtacaagcaagagcatgagaaggtactt 9320758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 9061366 - 9061522
Alignment:
Q  20 tttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcctt 119  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||| ||| |||| | |||    
T  9061366 tttggtatgatctcaagagtgaacaagttagttatgttgaaggaattcctaattttgatgaagctatgttttatgttggaagtctcgtatcacctttctt 9061465  T
Q  120 ccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtactt 179  Q
    |||||||||||   || | ||||||| ||||| | |||||||||||||||||||||||||    
T  9061466 ccctgttgata---cttgtaagaaggagaatcgtacaagcaagaccaagagaaggtactt 9061522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 8573733 - 8573876
Alignment:
Q  20 tttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcctt 119  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||   ||| ||||||| ||||||||||||||||||||||||| | |||    
T  8573733 tttggtatgatttgaagagtgaacaagtcagttatgttgaaggaattcctaattggaatgcagctatgttttgtgttggaagtcttgtaccacctttctt 8573832  T
Q  120 ccctgttgataattctaggaagaaggggaatcattcaagcaaga 163  Q
    |||||||||||||| ||||||| ||| ||||  | |||||||||    
T  8573833 ccctgttgataattgtaggaaggaggagaattgtacaagcaaga 8573876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 10335791 - 10335649
Alignment:
Q  20 tttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcctt 119  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||  |||| |||||    
T  10335791 tttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgacactatgatttgtgttggaagtcttgtttcaccttcctt 10335692  T
Q  120 ccctgttgataattctaggaagaaggggaatcattcaagcaag 162  Q
     ||||||||||||  ||||||||||  ||||| | ||||||||    
T  10335691 acctgttgataatcgtaggaagaagcagaatcgtacaagcaag 10335649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 10353044 - 10352878
Alignment:
Q  20 tttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcctt 119  Q
    |||||||||||||| ||||| ||||||||||||||||| ||| ||||| |||||| |||||  ||||||||||||||||||||||||||||||| | |||    
T  10353044 tttggtatgatttggagagtaaacaagttagttatgttcaagaaattcttaatttggatgacactatgatttgtgttggaagtcttgtaccaccttactt 10352945  T
Q  120 ccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttcttattg 186  Q
    |||||||||||||  ||||||| ||| ||||| | ||||| ||| | ||| ||||||||||||||||    
T  10352944 ccctgttgataatcgtaggaagcaggagaatcctacaagcgagagcgagaaaaggtacttcttattg 10352878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 10347699 - 10347553
Alignment:
Q  20 tttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcct---aatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctc 116  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||   ||| |  ||||| ||||| ||||||||||||||||||| ||||| ||    
T  10347699 tttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctcctaatatgaatgaaactatgttttgtgttggaagtcttgtcccaccttc 10347600  T
Q  117 cttccctgttgataattctaggaagaaggggaatcattcaagcaaga 163  Q
    ||||||||||||||||  ||||||||||| ||||||| |||||||||    
T  10347599 cttccctgttgataatcgtaggaagaaggagaatcatccaagcaaga 10347553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 10371772 - 10371626
Alignment:
Q  20 tttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccac--cctcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||| |||||| |||||||||| |||||||||||||  || ||    
T  10371772 tttggtatgatttgaagagtgaacaagttagttatgttgaaggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtaccaccaccccc 10371673  T
Q  118 tt-ccctgttgataattctaggaagaaggggaatcattcaagcaaga 163  Q
    || || ||||||||||  ||||||||||| ||||||| |||||||||    
T  10371672 ttaccttgttgataatggtaggaagaaggagaatcatacaagcaaga 10371626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 10341287 - 10341141
Alignment:
Q  20 tttggtatgatttgaagagtgaacaagttagttat---gttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctc 116  Q
    |||||||||||||| ||||||||||||||||||||   ||||||||||||||| |||| ||||| |||||||| |||||||||||| | |||||||| |     
T  10341287 tttggtatgatttggagagtgaacaagttagttattatgttgaaggaattcctgatttggatgatgctatgatgtgtgttggaagtatagtaccaccttt 10341188  T
Q  117 cttccctgttgataattctaggaagaaggggaatcattcaagcaaga 163  Q
    |||||||||||| |||  ||||||||||| ||||| |||||||||||    
T  10341187 cttccctgttgacaatcgtaggaagaaggagaatccttcaagcaaga 10341141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 9065821 - 9065942
Alignment:
Q  20 tttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcctt 119  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||   ||||  || |||||||||||| ||||||||||||| | |||||    
T  9065821 tttggtatgatttgaagagtgaacaagttatttatgttgaaggagttcctaattggaatgacactgtgatttgtgttgaaagtcttgtaccaacttcctt 9065920  T
Q  120 ccctgttgataattctaggaag 141  Q
    |||||||||||||| |||||||    
T  9065921 ccctgttgataattgtaggaag 9065942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 61 - 184
Target Start/End: Original strand, 7115917 - 7116040
Alignment:
Q  61 ggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagca 160  Q
    ||||||| ||||||  ||| |||| |||||||| ||| ||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||||| ||||||    
T  7115917 ggaattcgtaatttgaatggagctttgatttgttttgaaagccttgtaccaccttccttccctgttgataattgtaggaagaaggagaatcatacaagca 7116016  T
Q  161 agaccaagagaaggtacttcttat 184  Q
    ||| ||||||||||||||||||||    
T  7116017 agagcaagagaaggtacttcttat 7116040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 88 - 191
Target Start/End: Original strand, 9294915 - 9295019
Alignment:
Q  88 atttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttc-ttattg 186  Q
    |||| ||||| |||||| ||| |||| ||||||||||||||||||||||| ||||||| ||||| || |||||||| |||||||||||||||| ||||||    
T  9294915 atttatgttgaaagtctcgtagcaccttccttccctgttgataattctagtaagaaggagaatcgtttaagcaagagcaagagaaggtacttctttattg 9295014  T
Q  187 attat 191  Q
    |||||    
T  9295015 attat 9295019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 9291618 - 9291563
Alignment:
Q  238 ttgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9291618 ttgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 9291563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 238 - 293
Target Start/End: Original strand, 12012999 - 12013054
Alignment:
Q  238 ttgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12012999 ttgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 12013054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 9364523 - 9364442
Alignment:
Q  60 aggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaag 141  Q
    ||||||||||||| |  |||||||||||||||||||||| |||||||||||||| || || ||||||||||||| |||||||    
T  9364523 aggaattcctaatatgaatgaagctatgatttgtgttggtagtcttgtaccaccttctttacctgttgataattgtaggaag 9364442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 7115851 - 7115906
Alignment:
Q  19 gtttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaattt 74  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  7115851 gtttggtatgatttgaagagcgaacaagttagttgtgttgaaggaattcctaattt 7115906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 8579712 - 8579823
Alignment:
Q  20 tttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcctt 119  Q
    ||||||||||| | || |||||| |||||| || |||| ||||||||||||||||| ||||| ||||||||| ||||||||  ||| ||||||| |||||    
T  8579712 tttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaatttcaatgaaactatgatttatgttggaacccttctaccaccttcctt 8579811  T
Q  120 ccctgttgataa 131  Q
     ||| |||||||    
T  8579812 gcctattgataa 8579823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 293
Target Start/End: Original strand, 11987937 - 11987992
Alignment:
Q  238 ttgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 293  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  11987937 ttgaattcctattataggacaaggattttctaattactttgaagtctctacctttg 11987992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 16269003 - 16268952
Alignment:
Q  20 tttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaa 71  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16269003 tttggtatgatttgaagagtgaacgagttagttatgttgaaggaattcctaa 16268952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 240 - 293
Target Start/End: Complemental strand, 9364295 - 9364242
Alignment:
Q  240 gaattcttattataggacaaggattctctaattactttgaagtctctacctttg 293  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  9364295 gaattcttattataggacaaggagtctctaattactttgaagtctatacctttg 9364242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 9315699 - 9315644
Alignment:
Q  238 ttgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 293  Q
    |||||||||||||||||||||||||||| ||||||||||| || ||||||||||||    
T  9315699 ttgaattcttattataggacaaggattccctaattactttaaattctctacctttg 9315644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 9320651 - 9320596
Alignment:
Q  238 ttgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 293  Q
    ||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||    
T  9320651 ttgaatttttattatcggacaaggatactctaattactttgaagtctctacctttg 9320596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 10352790 - 10352735
Alignment:
Q  238 ttgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 293  Q
    |||||||||||| |||||| |||||||||||||||||||||| |||| ||||||||    
T  10352790 ttgaattcttatcataggataaggattctctaattactttgacgtctttacctttg 10352735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 280
Target Start/End: Complemental strand, 9274242 - 9274200
Alignment:
Q  238 ttgaattcttattataggacaaggattctctaattactttgaa 280  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  9274242 ttgaattcttattataggacaaggattcactaattactttgaa 9274200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 293
Target Start/End: Original strand, 9066083 - 9066138
Alignment:
Q  238 ttgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 293  Q
    ||||| |||||| |||||| || |||||||||||||||||||||| ||||||||||    
T  9066083 ttgaagtcttatcataggataaagattctctaattactttgaagtttctacctttg 9066138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 293
Target Start/End: Original strand, 8573993 - 8574035
Alignment:
Q  251 ataggacaaggattctctaattactttgaagtctctacctttg 293  Q
    |||||||||||||||||||||||||||||||| | ||||||||    
T  8573993 ataggacaaggattctctaattactttgaagtttatacctttg 8574035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 293
Target Start/End: Original strand, 19393261 - 19393321
Alignment:
Q  238 ttgaattcttattataggacaaggatt-----ctctaattactttgaagtctctacctttg 293  Q
    ||||||||||||||||||| |||||||     ||||||||||||||||||||| |||||||    
T  19393261 ttgaattcttattataggaaaaggattagattctctaattactttgaagtctcaacctttg 19393321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 9284657 - 9284703
Alignment:
Q  238 ttgaattcttattataggacaaggattctctaattactttgaagtct 284  Q
    ||||||||||||||| ||||||||| |||| ||||||||||| ||||    
T  9284657 ttgaattcttattatcggacaaggagtctccaattactttgatgtct 9284703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 293
Target Start/End: Complemental strand, 9328255 - 9328225
Alignment:
Q  263 ttctctaattactttgaagtctctacctttg 293  Q
    |||||||||||||||||||||||||||||||    
T  9328255 ttctctaattactttgaagtctctacctttg 9328225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 275
Target Start/End: Original strand, 9295107 - 9295144
Alignment:
Q  238 ttgaattcttattataggacaaggattctctaattact 275  Q
    ||||||||||||||||||||| || |||||||||||||    
T  9295107 ttgaattcttattataggacaggggttctctaattact 9295144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 10341079 - 10341038
Alignment:
Q  238 ttgaattcttattataggacaaggattctctaattactttga 279  Q
    |||||||||||| |||||| ||||||||||||||||| ||||    
T  10341079 ttgaattcttatcataggataaggattctctaattaccttga 10341038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 4385 - 4229
Alignment:
Q  20 tttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcctt 119  Q
    |||||||||||||||||| |||||||||||||||||   ||| ||||||| ||||| ||| ||||| ||||||||||||||||||||||||||| |||||    
T  4385 tttggtatgatttgaagactgaacaagttagttatg---aagaaattcctgatttcaatggagctaagatttgtgttggaagtcttgtaccaccttcctt 4289  T
Q  120 ccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtactt 179  Q
     ||||||||||||||||| ||||||| ||||||| || |||||| ||||| |||||||||    
T  4288 tcctgttgataattctagtaagaaggagaatcatacatgcaagagcaagaaaaggtactt 4229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 4125 - 4070
Alignment:
Q  238 ttgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 293  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||    
T  4125 ttgaattcttattataggaaaaggattctataattactttgaattctctacctttg 4070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 41966915 - 41967028
Alignment:
Q  20 tttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcctt 119  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| |||||    
T  41966915 tttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattttgatgaagccatgttttgtgttggaagtcttgtaccaccttcctt 41967014  T
Q  120 ccctgttgataatt 133  Q
    |||||||| |||||    
T  41967015 ccctgttgttaatt 41967028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 293
Target Start/End: Original strand, 41967184 - 41967239
Alignment:
Q  238 ttgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 293  Q
    ||||||||||||||||||| ||  ||||||||||||||| |||| || ||||||||    
T  41967184 ttgaattcttattataggataactattctctaattacttcgaaggctttacctttg 41967239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 29453511 - 29453613
Alignment:
Q  20 tttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcctt 119  Q
    ||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||    
T  29453511 tttggtatgatctcaagagtgaacaagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccaccttcctt 29453610  T
Q  120 ccc 122  Q
    |||    
T  29453611 ccc 29453613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 29467987 - 29468090
Alignment:
Q  20 tttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcctt 119  Q
    ||||||||||| | ||||||||||| |||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||    
T  29467987 tttggtatgatctcaagagtgaacatgttaattatgttgaaggaattcctaatttgaatgaagctatgatttgtgttggaagtcttgtaccaccttcctt 29468086  T
Q  120 ccct 123  Q
    ||||    
T  29468087 ccct 29468090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 29423200 - 29423097
Alignment:
Q  20 tttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcctt 119  Q
    ||||||||||| | ||||||||||||||||||| |||| |||||||||||||||||||| |||| |||||||||||||||||||||||| |||| |||||    
T  29423200 tttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaagccatgatttgtgttggaagtcttgtatcaccttcctt 29423101  T
Q  120 ccct 123  Q
    ||||    
T  29423100 ccct 29423097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 29453747 - 29453799
Alignment:
Q  238 ttgaattcttattataggacaaggattctctaattactttgaagtctctacct 290  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29453747 ttgaattcttattatagaacaaggattctctaattactttgaagtctctacct 29453799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 29443774 - 29443828
Alignment:
Q  239 tgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 293  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  29443774 tgaattcttatcataggacaaggattctctaattattttgaagtctctacctttg 29443828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 29422993 - 29422938
Alignment:
Q  238 ttgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 293  Q
    |||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||    
T  29422993 ttgaattcttattatatgacaatgattctctaattattttgaagtctctacctttg 29422938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 29443528 - 29443630
Alignment:
Q  20 tttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcctt 119  Q
    ||||||||||| | |||||||||   |||||||||||||||||||||||||   | ||| | || || |||||||||||||||||||||| ||| || ||    
T  29443528 tttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtacaaccttcttt 29443627  T
Q  120 ccc 122  Q
    |||    
T  29443628 ccc 29443630  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 29443693 - 29443730
Alignment:
Q  191 tgtataaattaatatcaattcaatggacccatcatatg 228  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  29443693 tgtataagttaatatcaattcaatggacccatcatatg 29443730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 273
Target Start/End: Original strand, 29468238 - 29468273
Alignment:
Q  238 ttgaattcttattataggacaaggattctctaatta 273  Q
    |||||||||||||||||||||| |||||||||||||    
T  29468238 ttgaattcttattataggacaatgattctctaatta 29468273  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 37462403 - 37462238
Alignment:
Q  20 tttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaatttcgatgaa---gctatgatttgtgttggaagtcttgtaccaccctc 116  Q
    |||||||||||| |||||||||||||||||||||| |||||||| ||||||||||  ||| |   |||||||||||||||| |||||||||| ||||  |    
T  37462403 tttggtatgattggaagagtgaacaagttagttatattgaaggagttcctaatttgaatggagctgctatgatttgtgttgaaagtcttgtatcacctcc 37462304  T
Q  117 cttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttctt 182  Q
     |||||||||||||||| ||||||||||| | |     ||||||||| |||||||||||| |||||    
T  37462303 tttccctgttgataattgtaggaagaaggaggacaggacaagcaagagcaagagaaggtatttctt 37462238  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 37462150 - 37462095
Alignment:
Q  238 ttgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 293  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37462150 ttgaattcttgttataggacaaggattctctaattactttgaagtctctacctttg 37462095  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 45230343 - 45230244
Alignment:
Q  20 tttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcctt 119  Q
    ||||||||||||| |||||||||||||||| | ||||| |||||||||||| |||| ||||||  |||||||||| || ||| |||||| |||| |||||    
T  45230343 tttggtatgatttcaagagtgaacaagttactcatgttcaaggaattcctactttcaatgaagtaatgatttgtgctgaaagccttgtatcaccatcctt 45230244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 45237861 - 45237760
Alignment:
Q  20 tttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcctt 119  Q
    ||||||||||  | |||| ||||||||||| |||||||  ||||||||||| |||  ||||||  |||||||||| || ||| ||||||||||| |||||    
T  45237861 tttggtatgacctcaagaatgaacaagttatttatgttcgaggaattcctactttgaatgaagtaatgatttgtgctgaaagccttgtaccaccttcctt 45237762  T
Q  120 cc 121  Q
    ||    
T  45237761 cc 45237760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 45243605 - 45243531
Alignment:
Q  20 tttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtg 94  Q
    ||||||||||| | || ||||||||| ||| ||||||| |||||||||||| |||| ||||||  ||||||||||    
T  45243605 tttggtatgatctcaacagtgaacaacttacttatgttcaaggaattcctactttcaatgaagtaatgatttgtg 45243531  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 26574793 - 26574700
Alignment:
Q  20 tttggtatgatttgaagagtgaacaagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccacc 113  Q
    |||||||||||||| ||||| | ||||||||| || || ||| |  || | |||| ||||| ||||||||||||||||||||||||||||||||    
T  26574793 tttggtatgatttggagagtaatcaagttagtcattttcaagaagatcttgatttggatgacgctatgatttgtgttggaagtcttgtaccacc 26574700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 289
Target Start/End: Complemental strand, 26574576 - 26574525
Alignment:
Q  238 ttgaattcttattataggacaaggattctctaattactttgaagtctctacc 289  Q
    |||||||||||| |||||| |||||||||||||||||||||| |||| ||||    
T  26574576 ttgaattcttatcataggataaggattctctaattactttgacgtctttacc 26574525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 561078 - 561009
Alignment:
Q  60 aggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctccttccctgttgat 129  Q
    ||||||||||||| || || ||| |||||||| ||||||||| ||| ||||||| ||||| ||| |||||    
T  561078 aggaattcctaatatcaataaagttatgatttatgttggaagccttctaccaccttccttgcctattgat 561009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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