View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19932_low_35 (Length: 305)
Name: NF19932_low_35
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19932_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 4 - 290
Target Start/End: Original strand, 22687425 - 22687711
Alignment:
| Q |
4 |
gagagagaagaagaaaaataagggtctttttgttttgccacttcattcaagagtaacaggagcaagatatccttatatttggataagtatagcgaaagag |
103 |
Q |
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| T |
22687425 |
gagaaagaagaagaaaaataagggtctttttgttttgccacttcattcaagagtaacaggagcaagatatccttatatttggataagtatagcgaaagag |
22687524 |
T |
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| Q |
104 |
aatggttggaatgttttggttgatgcatgtgcattaggaccaaaagacatggattgttttggtctctcactttttcaaccggattttcttatttgttctt |
203 |
Q |
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| T |
22687525 |
aatggttggaatgttttggttgatgcatgtgcattaggaccgaaagacatggattgttttggtctttcactttttcaaccagattttcttatatgttctt |
22687624 |
T |
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| Q |
204 |
gttataaagttttcggagaaaacccttctggatttggttgcctttttatcaagaaaagtgctacgtcgattttggaaacaaattctt |
290 |
Q |
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| T |
22687625 |
gttataaagtttttggagaaaacccttctggatttggttgcctttttatcaagaaaagtgctacgtcgattttggaaacaaattctt |
22687711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 4 - 290
Target Start/End: Complemental strand, 22751643 - 22751357
Alignment:
| Q |
4 |
gagagagaagaagaaaaataagggtctttttgttttgccacttcattcaagagtaacaggagcaagatatccttatatttggataagtatagcgaaagag |
103 |
Q |
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| T |
22751643 |
gagaaagaagaagaaaaataagggtctttttgttttgccacttcattcaagagtaacaggagcaagatatccttatatttggataagtatagcgaaagag |
22751544 |
T |
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| Q |
104 |
aatggttggaatgttttggttgatgcatgtgcattaggaccaaaagacatggattgttttggtctctcactttttcaaccggattttcttatttgttctt |
203 |
Q |
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| T |
22751543 |
aatggttggaatgttttggttgatgcatgtgcattaggaccgaaagacatggattgttttgttctttcactttttcaaccagattttcttatatgttctt |
22751444 |
T |
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| Q |
204 |
gttataaagttttcggagaaaacccttctggatttggttgcctttttatcaagaaaagtgctacgtcgattttggaaacaaattctt |
290 |
Q |
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| T |
22751443 |
gttataaagtttttggagaaaacccttctggatttggttgcctttttatcaagaaaagtgctacgtcgattttggaaacaaattctt |
22751357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 45957934 - 45958179
Alignment:
| Q |
11 |
aagaagaaaaataagggtctttttgttttgccacttcattcaagagtaacaggagcaagatatccttatatttggataagtatagcgaaagagaatggtt |
110 |
Q |
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|||||||||||| ||||||||||| || |||||||||||||| |||||||||||||||||||||||| | ||||| || | ||| |||||||||||| |
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| T |
45957934 |
aagaagaaaaat---ggtctttttgtatttccacttcattcaagggtaacaggagcaagatatccttatctatggatgagaacagcacaagagaatggtt |
45958030 |
T |
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| Q |
111 |
ggaatgttttggttgatgcatgtgcattaggaccaaaagacatggattgttttggtctctcactttttcaaccggattttcttatttgttcttgttataa |
210 |
Q |
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| T |
45958031 |
ggcatgttttgattgatgcttgtgcattaggaccaaaagacatggacagttttggtctctctctatttcaaccagattttctcatttgttcattctacaa |
45958130 |
T |
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| Q |
211 |
agttttcggagaaaacccttctggatttggttgcctttttatcaagaaa |
259 |
Q |
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|||||| |||||||| || ||||| ||||||||||||||| |||||||| |
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| T |
45958131 |
agtttttggagaaaatccatctggttttggttgcctttttgtcaagaaa |
45958179 |
T |
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