View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19932_low_39 (Length: 284)

Name: NF19932_low_39
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19932_low_39
NF19932_low_39
[»] chr8 (5 HSPs)
chr8 (57-140)||(38799515-38799598)
chr8 (57-140)||(38821919-38822002)
chr8 (58-122)||(38807034-38807098)
chr8 (224-271)||(42794212-42794259)
chr8 (57-140)||(43479699-43479782)
[»] chr4 (1 HSPs)
chr4 (58-140)||(24860566-24860648)
[»] scaffold0197 (1 HSPs)
scaffold0197 (58-140)||(31031-31113)
[»] chr5 (3 HSPs)
chr5 (58-140)||(9866683-9866765)
chr5 (58-140)||(12531512-12531594)
chr5 (58-140)||(12547025-12547107)
[»] chr7 (2 HSPs)
chr7 (58-140)||(3929987-3930069)
chr7 (58-140)||(21317594-21317676)
[»] chr2 (2 HSPs)
chr2 (224-271)||(19398011-19398058)
chr2 (58-140)||(13576368-13576450)
[»] chr1 (1 HSPs)
chr1 (64-137)||(7594163-7594236)


Alignment Details
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 57 - 140
Target Start/End: Complemental strand, 38799598 - 38799515
Alignment:
Q  57 tgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagtccaaccaagtaagctttagcagcttcttgaagagc 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  38799598 tgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagcttcttgaagagc 38799515  T

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Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 57 - 140
Target Start/End: Original strand, 38821919 - 38822002
Alignment:
Q  57 tgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagtccaaccaagtaagctttagcagcttcttgaagagc 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  38821919 tgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagcttcttgaagagc 38822002  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 38807098 - 38807034
Alignment:
Q  58 gtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagtccaaccaagtaagcttt 122  Q
    ||||||||||||||||||||||| ||  | |||||||| |||||||| |||||||||||||||||    
T  38807098 gtaactctcttagcatgaattgcgcacggatttgtgtcctcaaagagaccaaccaagtaagcttt 38807034  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 42794259 - 42794212
Alignment:
Q  224 ccaattctttctccctcacacctcctcaaaatccatatatgatttttt 271  Q
    ||||||||||||||||| ||||||||||||  ||||||||| ||||||    
T  42794259 ccaattctttctccctctcacctcctcaaagcccatatatgttttttt 42794212  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 140
Target Start/End: Original strand, 43479699 - 43479782
Alignment:
Q  57 tgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagtccaaccaagtaagctttagcagcttcttgaagagc 140  Q
    |||||| |||||||||||||| || |||||||| || |||||||| |  ||||| |  ||||||| ||| ||||||||||||||    
T  43479699 tgtaaccctcttagcatgaatagcgcaaaggttagtatcttcaaacaaaccaacaagataagcttcagcggcttcttgaagagc 43479782  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 24860648 - 24860566
Alignment:
Q  58 gtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagtccaaccaagtaagctttagcagcttcttgaagagc 140  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||||||| |  ||||||| ||||||||||||||||||    
T  24860648 gtaactctcttagcatgaatagcgcaaagatttgtatcttcaaagagtccaacgagataagcttcagcagcttcttgaagagc 24860566  T

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Target: scaffold0197 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 31113 - 31031
Alignment:
Q  58 gtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagtccaaccaagtaagctttagcagcttcttgaagagc 140  Q
    |||||||||||||||||||| || ||||| ||||| |||||||| |  ||||| |  ||||||| ||||||||||||||||||    
T  31113 gtaactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttcagcagcttcttgaagagc 31031  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 9866683 - 9866765
Alignment:
Q  58 gtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagtccaaccaagtaagctttagcagcttcttgaagagc 140  Q
    |||||||||||||||||||| ||||||||||| || |||||||| |  ||||| |  ||  ||||||||||||||||||||||    
T  9866683 gtaactctcttagcatgaatagcacaaaggttagtatcttcaaacaaaccaacaagatagtctttagcagcttcttgaagagc 9866765  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 12531594 - 12531512
Alignment:
Q  58 gtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagtccaaccaagtaagctttagcagcttcttgaagagc 140  Q
    ||||| |||||||||||||| ||||| || || || |||||||| |  ||||| |  ||||||| ||||||||||||||||||    
T  12531594 gtaaccctcttagcatgaatggcacagagattagtatcttcaaacaaaccaacaagataagcttcagcagcttcttgaagagc 12531512  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 12547025 - 12547107
Alignment:
Q  58 gtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagtccaaccaagtaagctttagcagcttcttgaagagc 140  Q
    ||||| |||||||||||||| ||||| || || || |||||||| |  ||||| |  ||||||| ||||||||||||||||||    
T  12547025 gtaaccctcttagcatgaatggcacagagattagtatcttcaaacaaaccaacaagataagcttcagcagcttcttgaagagc 12547107  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 3929987 - 3930069
Alignment:
Q  58 gtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagtccaaccaagtaagctttagcagcttcttgaagagc 140  Q
    |||||||||||||||||||| |||||||| || || |||||||| |  ||||| |  || |||| ||||||||||||||||||    
T  3929987 gtaactctcttagcatgaatggcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcagcttcttgaagagc 3930069  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 21317676 - 21317594
Alignment:
Q  58 gtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagtccaaccaagtaagctttagcagcttcttgaagagc 140  Q
    |||||||||||||||||||| || ||||| ||||| |||||||| |  ||||| |  ||||||| ||| ||||||||||||||    
T  21317676 gtaactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttcagccgcttcttgaagagc 21317594  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 19398058 - 19398011
Alignment:
Q  224 ccaattctttctccctcacacctcctcaaaatccatatatgatttttt 271  Q
    ||||||||||||||||| ||||||||||||  ||||||||| ||||||    
T  19398058 ccaattctttctccctctcacctcctcaaagcccatatatgttttttt 19398011  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 13576450 - 13576368
Alignment:
Q  58 gtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagtccaaccaagtaagctttagcagcttcttgaagagc 140  Q
    ||||| |||||||||||||| |||||||| || || || ||||| |  ||||| |  ||||||| ||||||||||||||||||    
T  13576450 gtaaccctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagc 13576368  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 7594163 - 7594236
Alignment:
Q  64 ctcttagcatgaattgcacaaaggtttgtgtcttcaaagagtccaaccaagtaagctttagcagcttcttgaag 137  Q
    |||||||||||||||||||| || || ||||| ||||| | |||||||| |||||| | ||| ||||| |||||    
T  7594163 ctcttagcatgaattgcacacagattggtgtcctcaaacaatccaaccaggtaagcctcagctgcttcctgaag 7594236  T

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