View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19932_low_40 (Length: 280)
Name: NF19932_low_40
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19932_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 265
Target Start/End: Original strand, 5475730 - 5475982
Alignment:
| Q |
13 |
aatattataacgatggagtattcaccgtcgtttaagattggttaatttatgtcacagaagattgattattgaagagagtgttaaaaagagagtatcaaaa |
112 |
Q |
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| T |
5475730 |
aatattataacgatggagtattcaccgtcgtttaagaatggttaatttatatcacaggagattgagtatcgaagagagtgttaaaaagagaatatcaaaa |
5475829 |
T |
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| Q |
113 |
tatacattatatgttgaacacacgctctgatgacactatttcaaatggcaaagcatctaaaagtttctttatgaagacaaacaaaatcaaacatatgttt |
212 |
Q |
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| T |
5475830 |
tatacattatatgttgaacacacgctctgatgacactatttcaaatggcaaagcatgtaaaagtttctttatgaagacaaacaaaatcaaacatatgttt |
5475929 |
T |
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| Q |
213 |
cagaagatttatgaataggatatgctgttaggtggaataaagatcacctttat |
265 |
Q |
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| T |
5475930 |
cagaagatttatgaataggacatgctgttaggtggaataaagatcacctttat |
5475982 |
T |
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