View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19932_low_41 (Length: 278)
Name: NF19932_low_41
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19932_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 25 - 265
Target Start/End: Original strand, 23436813 - 23437053
Alignment:
| Q |
25 |
acaatggttaccctctttgaaaacatgagatacaatgaaattcatagaacttagcatgttccttaaattacaaggcacctgagagtttttgtttagaaca |
124 |
Q |
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| T |
23436813 |
acaatggctaccctctttgaaaacatgagatacaatgaaattcatagaacttagcatgttccttaaattacaaggcacctgagagtttttgtttagaaca |
23436912 |
T |
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| Q |
125 |
tgcaccgccattgcataatcaagctcaagccaaagatgatgccaatccttttgatgagtaatctcaattgctctcaaagctccacataattcagcctgaa |
224 |
Q |
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| T |
23436913 |
tgtaccgccattgcataatcaagctcaagccaaagatgatgccaatccttttgatgagtaatctcaattgctctcaaagctccacataattcagcctgaa |
23437012 |
T |
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| Q |
225 |
aagcattaccttataagttttcagcaaagcacaagatcatg |
265 |
Q |
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| T |
23437013 |
aagcattaccttctaagttttcagcaaagcacaagatcatg |
23437053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 23434690 - 23434720
Alignment:
| Q |
1 |
accaatgttaactaaaccatctgcacaatgg |
31 |
Q |
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| T |
23434690 |
accaatgttaactaaaccatctgcacaatgg |
23434720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 86 - 259
Target Start/End: Original strand, 24358533 - 24358709
Alignment:
| Q |
86 |
cttaaattacaaggcacctgagagtttttgtttagaacatgcaccgccattgcataatcaagctcaagccaaagatgatgccaatccttttgatgagtaa |
185 |
Q |
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| T |
24358533 |
cttaagttgcaaggaacctgtgtgtttttgtttaaaacatgaaccaccattgctgaatccagctcaagccaaagatgatgccaacccttttggtgagcaa |
24358632 |
T |
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| Q |
186 |
tctcaattgctctcaaagctccacataattcagcctgaaaagcattacctt---ataagttttcagcaaagcacaag |
259 |
Q |
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| T |
24358633 |
tctcaattgctctcatagctccacaaagttcagcctgaaacgcattaccttctcctaagttctcagcaaagcacaag |
24358709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 24676755 - 24676673
Alignment:
| Q |
152 |
agccaaagatgatgccaatccttttgatgagtaatctcaattgctctcaaagctccacataattcagcctgaaaagcattacc |
234 |
Q |
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| T |
24676755 |
agccaaagatgattccaactgttttgatgagcagtctcaattgctctcatagctccaattaactcagcttgaaatgcattacc |
24676673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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