View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19932_low_44 (Length: 273)
Name: NF19932_low_44
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19932_low_44 |
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Alignment Details
Target: chr6 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 13 - 259
Target Start/End: Complemental strand, 3983477 - 3983226
Alignment:
| Q |
13 |
agaagaatagagaattttcagacccttgatgtaacaacaatcttcttggatatgcaagtattatgcatgtaatagcaaagtgcaccttaaagtacatata |
112 |
Q |
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| T |
3983477 |
agaagaatagagaattttcagacccttcatgtaacaacaatcttcttggatatgcaagtattatgaatgtaacaacaaagtgtaccttagagtacataca |
3983378 |
T |
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| Q |
113 |
tttatatagagatagaggtaatatactctaga-taaaagaaaagaatgagttcctg-tttttcgggtgacacatctaacatgctcctctcctttaaaata |
210 |
Q |
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| T |
3983377 |
tatatatagagatagagataacagtgtctagagtaaaagaaaagaatgagttcccgttttttcaggtgagacacctaacatgctcctctcctttaaaata |
3983278 |
T |
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| Q |
211 |
ggaaaaacttttttaa---ctatattttataaaagaaaaacttgtggtaagt |
259 |
Q |
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| T |
3983277 |
gaaaaaacttttttaaattttatattttataaaagaaaaacttgtggtaagt |
3983226 |
T |
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