View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19932_low_47 (Length: 262)
Name: NF19932_low_47
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19932_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 12862066 - 12861821
Alignment:
| Q |
1 |
aatactcaacaacactataatctctaaa-tgagttacgaacataagagttattaatcgatcttaacagtagacattaacactataatcttgaatcttgat |
99 |
Q |
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| T |
12862066 |
aatactcaataacactataatctctaaaatgagttacgaacataagagtgattaatcgatcttaacagtagacattaacactataatcttgaatcttgat |
12861967 |
T |
|
| Q |
100 |
tgaaatttagaaagtaaaatcgatcttaagggtacctccaagcttggaaacaaattccgataagaaacgcaaaataagcatcaatggacgcataagcaac |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12861966 |
tgaaatttagaaagtaaaatcgatcttaagggtacctccaagcttggaaacaaattccgataagaaacgcaaaataagcatcaatggacgcataagcaac |
12861867 |
T |
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| Q |
200 |
ttgatgtgcataaagattctctcgattccaattactcctaccaact |
245 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12861866 |
ttgatgtgcataaagattctcttgattccaattactcctaccaact |
12861821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 12843425 - 12843660
Alignment:
| Q |
11 |
aacactataatctctaaa-tgagttacgaacataagagttattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaatttag |
109 |
Q |
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|||||||||||||||||| ||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12843425 |
aacactataatctctaaaatgagttaagaacataagaatgattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaatttac |
12843524 |
T |
|
| Q |
110 |
aaagtaaaatcgatcttaagggtacctccaagcttggaaacaaattccgataagaaacgcaaaataagcatcaatggacgcataagcaacttgatgtgca |
209 |
Q |
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| T |
12843525 |
aatgtaaaatcaatcttaacggtacctccaagcttgaacgcgaattccgatactaaaagcacaataagcatcaatggacgcataagcaatttgatcttca |
12843624 |
T |
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| Q |
210 |
taaagattctctcgattccaattactcctaccaact |
245 |
Q |
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| T |
12843625 |
taaagattctctgcattccaattgctccttccaact |
12843660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 13125753 - 13125837
Alignment:
| Q |
1 |
aatactcaacaacactataatctctaaa-tgagttacgaacataagagttattaatcgatcttaacagtagacattaacactata |
84 |
Q |
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|||| ||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
13125753 |
aatattcaacaacactataatctctaaaatgagttaggaacataagagtgattaatcgatcttaacagtacacattaacactata |
13125837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 13125589 - 13125629
Alignment:
| Q |
66 |
agtagacattaacactataatcttgaatcttgattgaaatt |
106 |
Q |
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| T |
13125589 |
agtagacattaacactatgatcttgaatcttgatagaaatt |
13125629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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