View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19932_low_49 (Length: 252)
Name: NF19932_low_49
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19932_low_49 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 42835524 - 42835287
Alignment:
| Q |
11 |
agaatatataggtttgttcaaattcaaatattctacaacaagattatagcgccagaataaccgctatttaataacactttatattaaatggcgtattgtg |
110 |
Q |
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| T |
42835524 |
agaaaatataggtttgttcaaattcaaatattctacaacaagattatagcgccacaataaccgctatttaataacactttatattaaatggcatattgcg |
42835425 |
T |
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| Q |
111 |
aaacataagtgattagttcaaattctactacactatatgatctactannnnnnnnnnnnnnnngttgaagaaatatagttctactatttgacaacgctaa |
210 |
Q |
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| T |
42835424 |
aaacatcagtgattagttcaaattctactacactaaatgatctacta----ttttttttttttgttgaagaaatatagttctattatttgacaacgctaa |
42835329 |
T |
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| Q |
211 |
taaacaactcacattttttgttctcttgatcacctgctcttt |
252 |
Q |
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| T |
42835328 |
taaacaactcacattttttgttctcttgatcacctgctcttt |
42835287 |
T |
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