View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19932_low_5 (Length: 510)
Name: NF19932_low_5
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19932_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 420
Target Start/End: Original strand, 38341245 - 38341645
Alignment:
| Q |
19 |
acaacgcataatatatgtaatttggggttcaaacccggccatcacaaaaacaaaagtatggttctggtccggaagagatgaaatatgagcaaattgaaaa |
118 |
Q |
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| T |
38341245 |
acaacacataatatatgtaatccgaggttcaaacccggccatcacaaaaacaaaagtatggttctggtccggaagagatgaaatatgagcaaattgaaaa |
38341344 |
T |
|
| Q |
119 |
tttaacttcataccctacatttgtacatttacccttaaaacacataaaccgccctaaacacccttcattctaacaaattaaaaaatgtccggtctaaaaa |
218 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38341345 |
tttaacttcatagcctacatttgtacatttacccttaaaacacataaaccgccctaaacacccttcattctaacaaattaaaaaatgtccggcctaaaaa |
38341444 |
T |
|
| Q |
219 |
gctactagtttgggaggatcaatcctactccaagttgatgtgatccggtaagaatgttc--acgggaagttttgtttttggaaatattaggtgtaannnn |
316 |
Q |
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| T |
38341445 |
gctactagtttgggaggatcaatcctactccaagttgatgtgatccggtaagaatgttcatacgggaagttttgtttttggaaatattaggtgtaa---t |
38341541 |
T |
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| Q |
317 |
nnnnnnnnnnnnnnnnntcacctctagttaattctttcaaataaatattgtattttgaattccatttaattaaaaaatttaacattactgaaatggattg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38341542 |
ttttaaaaaaaaaaaaatcacctctagttaattctttcaaataaatattgtattttgaattccatttaattaaaaaatttaacattacttaaatggattg |
38341641 |
T |
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| Q |
417 |
aagt |
420 |
Q |
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|||| |
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| T |
38341642 |
aagt |
38341645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 90 - 420
Target Start/End: Original strand, 38445509 - 38445838
Alignment:
| Q |
90 |
gaagagatgaaatatgagcaaattgaaaatttaacttcataccctacatttgtacatttacccttaaaacacataaaccgccctaaacacccttcattct |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38445509 |
gaagagatgaaatatgagcaaattgaaaatttaacttcatagcctacatttgtacatttacccttaaaacacataaaccgccctaaacacccttcattct |
38445608 |
T |
|
| Q |
190 |
aacaaattaaaaaatgtccggtctaaaaagctactagtttgggaggatcaatcctactccaagttgatgtgatccggtaagaatgttc--acgggaagtt |
287 |
Q |
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| T |
38445609 |
aacaaattaaaaaatgtccggcctaaaaagctactagtttgggaggatcaatcctactccaagttgatgtgatccggtaagaatgttcatacgggaagtt |
38445708 |
T |
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| Q |
288 |
ttgtttttggaaatattaggtgtaannnnnnnnnnnnnnnnnnnnntcacctctagttaattctttcaaataaatattgtattttgaattccatttaatt |
387 |
Q |
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| T |
38445709 |
ttgtttttggaaatattaggtgtaa---tttttaaaaaaaaaaaaatcacctctagttaattctttcaaataaatattgtattttgaattccatttaatt |
38445805 |
T |
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| Q |
388 |
aaaaaatttaacattactgaaatggattgaagt |
420 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
38445806 |
aaaaaatttaacattacttaaatggattgaagt |
38445838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 108 - 202
Target Start/End: Original strand, 38472267 - 38472362
Alignment:
| Q |
108 |
caaattgaaaatttaacttcataccctacatttgtacattta-cccttaaaacacataaaccgccctaaacacccttcattctaacaaattaaaaa |
202 |
Q |
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|||||||||||||||||||||||||| |||||| ||| ||| |||| |||||| |||||| ||||||||||| || ||||||||||||| |||| |
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| T |
38472267 |
caaattgaaaatttaacttcataccccacatttatactcttacccctaaaaacatataaactaccctaaacacctttaattctaacaaatttaaaa |
38472362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 457 - 494
Target Start/End: Original strand, 38341694 - 38341731
Alignment:
| Q |
457 |
aaggatatgcttcaactttgcaatcaaataaacaaaat |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
38341694 |
aaggatatgcttcaactttgcaatcaaataaacaaaat |
38341731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 457 - 494
Target Start/End: Original strand, 38445887 - 38445924
Alignment:
| Q |
457 |
aaggatatgcttcaactttgcaatcaaataaacaaaat |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
38445887 |
aaggatatgcttcaactttgcaatcaaataaacaaaat |
38445924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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