View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19932_low_51 (Length: 250)
Name: NF19932_low_51
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19932_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 18962735 - 18962498
Alignment:
| Q |
1 |
aagaatgtccagaaatactcgttagcgaggaatgaagtacctaggtctgctgatatcaatgcttccccatcataatttggtccagccaaaacagtccctg |
100 |
Q |
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| T |
18962735 |
aagaatgtccagaaatactcgttagcgaggaatgaagtacctaggtctgctgatatcaatgcttccccatcataatttggtccagccaaaacagtccctg |
18962636 |
T |
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| Q |
101 |
atggagataaaatgacactacctccacgacatacaacagtatctagtgtttgatcttcttcaacactagctaaaacatactctggatggggtggataatc |
200 |
Q |
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| T |
18962635 |
atggagataaaatgacactacctccgcgacatacaacagtatctggtgtttggtcctcttcagcactagcgaaaacatactccggatggggtggataatc |
18962536 |
T |
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| Q |
201 |
ctttcttttacaaaactggtttgctgacaagacaaaac |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
18962535 |
ctttcttttacaaaactggtttgctgacaagacaaaac |
18962498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 18967991 - 18967890
Alignment:
| Q |
38 |
tacctaggtctgctgatatcaatgcttccccatcataatttggtccagccaaaacagtccctgatggagataaaatgacactacctccacgacatacaac |
137 |
Q |
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||||||||||||||||||| | ||| ||||| |||||||| |||||||||||||||| ||||||||| |||| |||||||||||||||| ||||||||| |
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| T |
18967991 |
tacctaggtctgctgatattagtgcctccccctcataattgggtccagccaaaacagcccctgatggcgatataatgacactacctccagcacatacaac |
18967892 |
T |
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| Q |
138 |
ag |
139 |
Q |
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|| |
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| T |
18967891 |
ag |
18967890 |
T |
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