View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19932_low_55 (Length: 240)
Name: NF19932_low_55
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19932_low_55 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 42835166 - 42834945
Alignment:
| Q |
1 |
catgtccaattccctgttcgcatcttctatatcatgtattctttgaccaagttccctcaaagaactgatttcatcttgcagaaccatttgttgagtagca |
100 |
Q |
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| T |
42835166 |
catgtccaattccctgttcgtatcttctatatcatgtattctttgaccaagttccctcaaagaactgatttcatcttgcagaaccatttgttgagtagca |
42835067 |
T |
|
| Q |
101 |
tgcatctcttgtttcaagttttcagcttcatatttacgtaatttgttttctaattccttgtttatagactcacaatactctagtttagaggtcaattgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42835066 |
tgcatctcttgtttcaagttttcagcttcatatttacgtaatttgttttctaattccttgtttatagactcacaatactctagtttagaggtcaattgta |
42834967 |
T |
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| Q |
201 |
ttttcatttttgacaaacttgc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
42834966 |
ttttcatttttgacaaacttgc |
42834945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 52 - 221
Target Start/End: Complemental strand, 42843969 - 42843797
Alignment:
| Q |
52 |
ttccctcaaagaactgatttcatcttgcagaaccatttgttgagtagcatgca--tct-cttgtttcaagttttcagcttcatatttacgtaatttgttt |
148 |
Q |
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| T |
42843969 |
ttccctcaaagaattaacttcatcttgcaaagtcatttgctgagtagcatgcaattcttcttgtttcaatttttcagcttcatactgtcttaatttgttt |
42843870 |
T |
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| Q |
149 |
tctaattccttgtttatagactcacaatactctagtttagaggtcaattgtattttcatttttgacaaacttg |
221 |
Q |
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| T |
42843869 |
tccaattccttgtttctagactcacaatcctccaatttagaggtcaattgtattttcatgtttgacaaacttg |
42843797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 7363578 - 7363804
Alignment:
| Q |
1 |
catgtccaattccctgttcgcatcttctatatc--atgtattctttgaccaagttc---cctcaaagaactgatttcatcttgcagaaccatttgttgag |
95 |
Q |
| |
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|||| |||||| ||| ||| |||||||||||| ||| ||||||||||||||||| |||||||||| | | |||||||||| || ||||||||||| |
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| T |
7363578 |
catgcccaatttcctattcacatcttctatatagtatgcattctttgaccaagttcttccctcaaagaattaacctcatcttgcaaaatcatttgttgag |
7363677 |
T |
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| Q |
96 |
tagcatgca--tct-cttg-tttcaagttttcagcttcatatttacgtaatttgttttctaattccttgtttatagactcacaatactctagtttagagg |
191 |
Q |
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| T |
7363678 |
tagcatgcaattcttcttgatttcaatttttcagcttcatattgtcctaatttgttttccaattccttgtttctagactcacaatcctccaatttagagg |
7363777 |
T |
|
| Q |
192 |
tcaattgtattttcatttttgacaaac |
218 |
Q |
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| T |
7363778 |
tcaattgtattttcatgtttgacaaac |
7363804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 12628516 - 12628325
Alignment:
| Q |
24 |
cttctatatcatgtattctttgaccaag---ttccctcaaagaactgatttcatcttgcagaaccatttgttgagtagcatgcatctctt---gtttcaa |
117 |
Q |
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|||||| ||||||| |||| |||||||| ||||||||| ||||||||||||| |||| || ||||||||||||||||| || ||||| |||||| |
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| T |
12628516 |
cttctacatcatgttttctctgaccaaggtcttccctcaatgaactgatttcattgtgcaaaatcatttgttgagtagcattcaactcttcttgtttcat |
12628417 |
T |
|
| Q |
118 |
gttttcagcttcatatttacgtaatttgttttctaattccttgtttatagactcacaatactctagtttagaggtcaattgtattttcattt |
209 |
Q |
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| T |
12628416 |
cttttcagcttcatattgccttaatttgttttctaattcactgtttctagactcataatcatccaatttagagatcaattgtattttcattt |
12628325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 12622590 - 12622399
Alignment:
| Q |
24 |
cttctatatcatgtattctttgaccaagttc---cctcaaagaactgatttcatcttgcagaaccatttgttgagtagcatgcatctcttg---tttcaa |
117 |
Q |
| |
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||||||| ||||| |||| ||||||||||| ||||||| ||| |||| ||||| || | |||||||||||||||||| || ||||| ||||| |
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| T |
12622590 |
cttctatctcatgctttctctgaccaagttcttccctcaaataacagattgtatcttccaaagccatttgttgagtagcattcaactcttcatttttcat |
12622491 |
T |
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| Q |
118 |
gttttcagcttcatatttacgtaatttgttttctaattccttgtttatagactcacaatactctagtttagaggtcaattgtattttcattt |
209 |
Q |
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|||||||||||||||| | |||||||||||||||||| ||||| |||||||||| | ||| |||||||||||||||||| ||||||||| |
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| T |
12622490 |
cttttcagcttcatattgccttaatttgttttctaattcactgtttctagactcacagtcctccagtttagaggtcaattgttttttcattt |
12622399 |
T |
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