View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19932_low_57 (Length: 236)

Name: NF19932_low_57
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19932_low_57
NF19932_low_57
[»] chr6 (1 HSPs)
chr6 (1-223)||(26299181-26299405)
[»] chr3 (2 HSPs)
chr3 (1-223)||(45806527-45806753)
chr3 (1-223)||(40936612-40936834)


Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 26299405 - 26299181
Alignment:
Q  1 aagaaaataaa-gttgacgttgaataatagagtgaattgcgaaagaacatgaaataaattaacttactgcattattgacacttaccgataattaatgttt 99  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26299405 aagaaaataaaagttgacgttgaataatagagtgaattgcgaaagaacatgaaataaattaacttactgcattattgacacttaccgataattaatgttt 26299306  T
Q  100 tatttttgaaagaaattgtttactcatatttaatgttattatagtttattcct-nnnnnnnnnnngttcttatagtttaaaaaatattaaaggaggtcta 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||    
T  26299305 tatttttgaaagaaattgtttactcatatttaatgttattatagtttattcctaaaaaaaaaaaagttcttatagtttaaaaaatattaaaggaggtcta 26299206  T
Q  199 tgtaaattgtttttaggaggaattg 223  Q
    ||||||| |||||||||||||||||    
T  26299205 tgtaaatagtttttaggaggaattg 26299181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 45806753 - 45806527
Alignment:
Q  1 aagaaaataaa-gttgacgttgaataatagagtgaattgcgaaagaacatgaaataaattaacttactgcattattgacacttaccgataattaatgttt 99  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45806753 aagaaaataaaagttgacgttgaataatagagtgaattgcgaaagaacatgaaataaattaacttactgcattattgacacttaccgataattaatgttt 45806654  T
Q  100 tatttttgaaagaaattgtttactcatatttaatgttattatagtttattcct---nnnnnnnnnnngttcttatagtttaaaaaatattaaaggaggtc 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||    
T  45806653 tatttttgaaagaaattgtttactcatatttaatgttattatagtttattcctcaaaaaaaaaaaaagttcttatagtttaaaaaatattaaaggaggtc 45806554  T
Q  197 tatgtaaattgtttttaggaggaattg 223  Q
    ||||||||| |||||||||||||||||    
T  45806553 tatgtaaatcgtttttaggaggaattg 45806527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 40936834 - 40936612
Alignment:
Q  1 aagaaaataaa-gttgacgttgaataatagagtgaattgcgaaagaacatgaaataaattaacttactgcattattgacacttaccgataattaatgttt 99  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40936834 aagaaaataaaagttgacgttgaataatagagtgaattgcgaaagaacatgaaataaattaacttactgcattattgacacttaccgataattaatgttt 40936735  T
Q  100 tatttttgaaagaaattgtttactcatatttaatgttattatagtttattcctnnnnnnnnnnngttcttatagtttaaaaaatattaaaggaggtctat 199  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||           |||||||||||||| |||||||||||||||||||||    
T  40936734 tatttttgaaagaaattgtttactcatatttaatgttattattgtttatt-cttaaaaaaaaaagttcttatagtttataaaatattaaaggaggtctat 40936636  T
Q  200 gtaaattgtttttaggaggaattg 223  Q
    |||||| |||||||||||||||||    
T  40936635 gtaaatagtttttaggaggaattg 40936612  T

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