View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19932_low_6 (Length: 479)
Name: NF19932_low_6
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19932_low_6 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] scaffold0113 (1 HSPs) |
| | |
|
| [»] scaffold0073 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 13 - 479
Target Start/End: Original strand, 52798420 - 52798886
Alignment:
| Q |
13 |
aagaaaatgttgaacgagtggagaataaacactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattatatagagattaaactt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
52798420 |
aagaaaatgttgaacgagtggagaataaacactttaattttgatctataagaacatgggggtatatacaaaattgtgaaaattatatagagattaaactt |
52798519 |
T |
|
| Q |
113 |
atgagtcataccttggagttgtggaaaatagtgagttagcagagactaagaaaatagactcaagttattgaaaaccaatttgattttatgttagagagat |
212 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52798520 |
atgagtcatacctcggagttgtggaaaatagtgagttagcagagactaagaaaatagactcaagttattgaaaaccaatttgattttatgttagagagat |
52798619 |
T |
|
| Q |
213 |
cgaccatggaagctatctacttgctatggtgtgtgatgaaacaatatcagatggacnnnnnnnnctacacttagtttttattaatatggagaaaacaatt |
312 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
52798620 |
cgaccatggaagctatctacttgctatagcgtgtgatgaaacgatatcagatggacaaaaaatactacacttagtttttattaatatggagaaaacaatt |
52798719 |
T |
|
| Q |
313 |
gatagagcatcaagagagatttgtggaaaatcatatagaagaaagaggttggtgttgatatttatttattaaactacaaatcaataagtggaaataagta |
412 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52798720 |
gatagatcaccaagagagatttgtggaaaatcatatagaagaaagaggttagggttgatatttatttattaaactacaaatcaataagtggaaataagta |
52798819 |
T |
|
| Q |
413 |
caaatgatacttgttatgttacgggtataaagagagccgactcaattattctatgtgttgtccaata |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
52798820 |
caaatgatacttgttatgttacgggtataaagagggccgactcaattattctatgtgttgtccaata |
52798886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 146
Target Start/End: Original strand, 38849035 - 38849169
Alignment:
| Q |
11 |
cgaagaaaatgttgaacgagtggagaataaacactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattatatagagattaaac |
110 |
Q |
| |
|
|||||||||| | | |||||||||||| ||||||||||||| ||||||||||||| ||||| ||||||||||||| || ||||||| | ||||||| |
|
|
| T |
38849035 |
cgaagaaaatatcggacgagtggagaagaaacactttaattccaatctataagaacaaggggg-atatacaaaattgcgcgaattataagggaattaaac |
38849133 |
T |
|
| Q |
111 |
ttatgagtcataccttggagttgtggaaaatagtga |
146 |
Q |
| |
|
| |||||||||||| || |||| ||| ||| ||||| |
|
|
| T |
38849134 |
taatgagtcataccatgaagttatgggaaagagtga |
38849169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 51449058 - 51448946
Alignment:
| Q |
11 |
cgaagaaaatgttgaacgagtggagaataaacactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattatatagagattaaac |
110 |
Q |
| |
|
||||||||||| | |||||||||||| ||||||||||||| ||||||||||||| | ||| ||||||||||||| || ||||||| | ||||| | |
|
|
| T |
51449058 |
cgaagaaaatgccggacgagtggagaagaaacactttaattccaatctataagaacaagaggg-atatacaaaattgcgcgaattataggggaattaagc |
51448960 |
T |
|
| Q |
111 |
ttatgagtcatacc |
124 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
51448959 |
taatgagtcatacc |
51448946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 50630495 - 50630446
Alignment:
| Q |
185 |
aaccaatttgattttatgttagagagatcgaccatggaagctatctactt |
234 |
Q |
| |
|
|||||||||||||||||| | | ||| |||||||||||||| |||||||| |
|
|
| T |
50630495 |
aaccaatttgattttatgcttgcgaggtcgaccatggaagcaatctactt |
50630446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 32405806 - 32405655
Alignment:
| Q |
13 |
aagaaaatgttgaacgagtggagaataaacactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattatatagagattaaactt |
112 |
Q |
| |
|
|||||||||||| | |||||||||| ||||||||||||| |||||||| |||||| || | |||||||||||||||||||||||| || ||||| ||| |
|
|
| T |
32405806 |
aagaaaatgttggatgagtggagaagaaacactttaattctgatctattagaacaaggcg--atatacaaaattgtgcaaattatagggaaattaacctt |
32405709 |
T |
|
| Q |
113 |
atgagtcataccttggagttgtggaaaatagtgagttagcagagactaagaaaa |
166 |
Q |
| |
|
|||||||||||| || |||| ||| ||| |||| | ||| ||||||||||||| |
|
|
| T |
32405708 |
atgagtcataccatgaagttatgggaaaaggtgattgagcggagactaagaaaa |
32405655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 49348750 - 49348529
Alignment:
| Q |
11 |
cgaagaaaatgttgaacgagtggagaataaacactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattata-tagagattaaa |
109 |
Q |
| |
|
|||||||||||| | |||||||||||| || |||||||||| ||||||||||||| ||||| |||||||||||| || ||||||| ||| ||||| |
|
|
| T |
49348750 |
cgaagaaaatgtcggacgagtggagaagaagcactttaattccaatctataagaacaaggggg--tatacaaaattgcgcgaattataggaga-attaag |
49348654 |
T |
|
| Q |
110 |
cttatgagtcataccttggagttgtggaaaatagtgagttagcagagactaagaaaatagactcaagttattgaaaaccaatttgattttatgttagaga |
209 |
Q |
| |
|
|| |||||||||||| || ||| ||| ||| |||| | ||||||||||| |||||| |||||| || |||||||||| ||||||| | || |
|
|
| T |
49348653 |
ctaatgagtcataccatgaagtcatgggaaagggtgatcgaaagaagactaagaaagaagactcgagttatggataaccaatttggttttatgcctggga |
49348554 |
T |
|
| Q |
210 |
gatcgaccatggaagctatctactt |
234 |
Q |
| |
|
| ||||| |||||||| |||||||| |
|
|
| T |
49348553 |
ggtcgactatggaagcaatctactt |
49348529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 51442113 - 51441891
Alignment:
| Q |
11 |
cgaagaaaatgttgaacgagtggagaataaacactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattatatagagattaaac |
110 |
Q |
| |
|
|||||||||||| | |||||||||||| || |||||||||| ||||||||||||| ||||| ||||||||||| || ||||||| | ||||| | |
|
|
| T |
51442113 |
cgaagaaaatgtcggacgagtggagaagaagcactttaattccaatctataagaacaaggggg-atatacaaaatcacgcgaattataggggaattaagc |
51442015 |
T |
|
| Q |
111 |
ttatgagtcataccttggagttgtggaaaatagtgagttagcagagactaagaaaatagactcaagttattgaaaaccaatttgattttatgttagagag |
210 |
Q |
| |
|
| |||||||||||| || |||| ||| ||| |||| | ||||||||||| |||||| ||||| || |||||||||| ||||||| | ||| |
|
|
| T |
51442014 |
taatgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaatttggttttatgcctgggag |
51441915 |
T |
|
| Q |
211 |
atcgaccatggaagctatctactt |
234 |
Q |
| |
|
||||| |||||||| |||||||| |
|
|
| T |
51441914 |
gtcgactatggaagcaatctactt |
51441891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 35829721 - 35829652
Alignment:
| Q |
28 |
gagtggagaataaacactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattata |
98 |
Q |
| |
|
|||||||||| || |||||||||| |||||||||||||| | || ||||| |||||||||||||||||| |
|
|
| T |
35829721 |
gagtggagaagaagcactttaattccgatctataagaacaagatgg-atataaaaaattgtgcaaattata |
35829652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 33351155 - 33350933
Alignment:
| Q |
11 |
cgaagaaaatgttgaacgagtggagaataaacactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattatatagagattaaac |
110 |
Q |
| |
|
|||||||||||| | |||||||||||| || |||||||||| ||| ||||||||| ||||| ||||||||||||| || ||||||| | ||||| | |
|
|
| T |
33351155 |
cgaagaaaatgtcggacgagtggagaagaagcactttaattccaatcgataagaacaaggggg-atatacaaaattgcgcgaattataggggaattaagc |
33351057 |
T |
|
| Q |
111 |
ttatgagtcataccttggagttgtggaaaatagtgagttagcag-agactaagaaaatagactcaagttattgaaaaccaatttgattttatgttagaga |
209 |
Q |
| |
|
| |||||||||||| || |||||||| ||| |||| | | || ||||||||||| |||||| ||||| || |||||||||| ||||||| | | || |
|
|
| T |
33351056 |
taatgagtcataccatgaagttgtgggaaagggtga-tcaaaagaagactaagaaaggagactctagttacggataaccaatttggttttatgcttggga |
33350958 |
T |
|
| Q |
210 |
gatcgaccatggaagctatctactt |
234 |
Q |
| |
|
| ||||| |||||||| |||||||| |
|
|
| T |
33350957 |
ggtcgactatggaagcaatctactt |
33350933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 36650927 - 36651149
Alignment:
| Q |
11 |
cgaagaaaatgttgaacgagtggagaataaacactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattata-tagagattaaa |
109 |
Q |
| |
|
||||||||||| | |||||||||||| || |||||||||| ||||||||||||| ||||| ||||||||||||| | ||||||| ||| ||||| |
|
|
| T |
36650927 |
cgaagaaaatgccggacgagtggagaagaatcactttaattccaatctataagaacaaggggg-atatacaaaattgcgtgaattataggaga-attaag |
36651024 |
T |
|
| Q |
110 |
cttatgagtcataccttggagttgtggaaaatagtgagttagcagagactaagaaaatagactcaagttattgaaaaccaatttgattttatgttagaga |
209 |
Q |
| |
|
|| |||||||||||| || |||| ||| ||| |||| | | ||||||||||| |||||| ||||| || |||||||||| |||||||| | || |
|
|
| T |
36651025 |
ctaatgagtcataccatgaagttatgggaaagggtgattgaaagaagactaagaaaggagactcgagttacggataaccaatttggttttatgtctggga |
36651124 |
T |
|
| Q |
210 |
gatcgaccatggaagctatctactt |
234 |
Q |
| |
|
| |||| |||||||| |||||||| |
|
|
| T |
36651125 |
ggtcgattatggaagcaatctactt |
36651149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 11592622 - 11592734
Alignment:
| Q |
11 |
cgaagaaaatgttgaacgagtggagaataaacactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattatatagagattaaac |
110 |
Q |
| |
|
||||||||||| | |||||||||||| || |||||||||| |||||||| |||| ||||| ||||||||||||| || ||||||| | ||||| | |
|
|
| T |
11592622 |
cgaagaaaatgccggacgagtggagaagaagcactttaattccaatctataaaaacaaggggg-atatacaaaattgcgcgaattataggggaattaagc |
11592720 |
T |
|
| Q |
111 |
ttatgagtcatacc |
124 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
11592721 |
taatgagtcatacc |
11592734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 48056134 - 48056063
Alignment:
| Q |
42 |
cactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattatatagagattaaacttat |
114 |
Q |
| |
|
|||||||||| |||||| ||||| || ||| |||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
48056134 |
cactttaattctgatctgtaagagcaactggg-atatacaaaattgtgcaaattatagagtgattaaacttat |
48056063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 20499105 - 20499232
Alignment:
| Q |
75 |
atatacaaaattgtgcaaattatatagagattaaacttatgagtcataccttggagttgtggaaaatagtgagttagcagagactaagaaaatagactca |
174 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||| | | ||| || |||| | | ||| ||||| | | ||||||||||||||| | || |
|
|
| T |
20499105 |
atatacaaaattgtgcaaattatagggtgattaaacttataggacctactatgtagttataggaaagagtgattgaatggagactaagaaaataagcgca |
20499204 |
T |
|
| Q |
175 |
agttattgaaaaccaatttgattttatg |
202 |
Q |
| |
|
||||||||| |||||||||| ||||||| |
|
|
| T |
20499205 |
agttattgataaccaatttggttttatg |
20499232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 1288877 - 1288791
Alignment:
| Q |
11 |
cgaagaaaatgttgaacgagtggagaataaacactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattata |
98 |
Q |
| |
|
|||||||||||| |||||||||||||| || |||||||||| ||||||||||||| ||||| |||||||||||||||| ||||||| |
|
|
| T |
1288877 |
cgaagaaaatgtcgaacgagtggagaagaagcactttaattccaatctataagaacaaggggg-atatacaaaattgtgcgaattata |
1288791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 20317924 - 20318146
Alignment:
| Q |
11 |
cgaagaaaatgttgaacgagtggagaataaacactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattatatagag-attaaa |
109 |
Q |
| |
|
|||||||||||| | |||||||||||| || |||||||||| ||||||||||||| ||||| ||||||||||||| ||||||||| ||| | ||||| |
|
|
| T |
20317924 |
cgaagaaaatgtcggacgagtggagaagaagcactttaattccaatctataagaacaaggggg-atatacaaaattgcgcaaattat-tagggaattaag |
20318021 |
T |
|
| Q |
110 |
cttatgagtcataccttggagttgtggaaaatagtgagttagcagagactaagaaaatagactcaagttattgaaaaccaatttgattttatgttagaga |
209 |
Q |
| |
|
|| |||||||||||| || |||| ||| ||| |||| | ||||||||||| |||||| ||||| || |||||||||| ||||||| | || |
|
|
| T |
20318022 |
ctaatgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacagataaccaatttggttttatgcctggga |
20318121 |
T |
|
| Q |
210 |
gatcgaccatggaagctatctactt |
234 |
Q |
| |
|
| ||||| |||||||| |||||||| |
|
|
| T |
20318122 |
ggtcgactatggaagcaatctactt |
20318146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 26894 - 27004
Alignment:
| Q |
13 |
aagaaaatgttgaacgagtggagaataaacactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattatatagagattaaactt |
112 |
Q |
| |
|
|||||||||| | | ||||||| || ||||||||||||| || |||||||||||| || || |||||||||||||| | ||||||| | |||||| | |
|
|
| T |
26894 |
aagaaaatgtcggatgagtggaaaagaaacactttaattctgttctataagaacaaggagg-atatacaaaattgttcgaattataggggaattaaatta |
26992 |
T |
|
| Q |
113 |
atgagtcatacc |
124 |
Q |
| |
|
|||||||||||| |
|
|
| T |
26993 |
atgagtcatacc |
27004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 2076823 - 2076737
Alignment:
| Q |
11 |
cgaagaaaatgttgaacgagtggagaataaacactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattata |
98 |
Q |
| |
|
|||||||||||| | |||||||||||| || |||||||||| ||||||||||||| ||||| | ||||||||||| || ||||||| |
|
|
| T |
2076823 |
cgaagaaaatgtcggacgagtggagaagaagcactttaattccaatctataagaacaaggggg-acatacaaaattgcgcgaattata |
2076737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 124
Target Start/End: Original strand, 17212225 - 17212314
Alignment:
| Q |
33 |
gagaataaacactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattatatagagattaaacttatgagtcatacc |
124 |
Q |
| |
|
|||||||| ||||||| | ||||| |||||||| ||||| |||||||||||||||||||||||| || | |||||||||||||| ||||| |
|
|
| T |
17212225 |
gagaataagcactttagtgccgatctttaagaacaaggggg-atatacaaaattgtgcaaattata-aggggttaaacttatgagttatacc |
17212314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 24177457 - 24177569
Alignment:
| Q |
11 |
cgaagaaaatgttgaacgagtggagaataaacactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattatatagagattaaac |
110 |
Q |
| |
|
||||||||||| ||| |||||||||| || |||||||||| ||||||||||||| ||||| ||||||||||||| | ||||||| | ||||| | |
|
|
| T |
24177457 |
cgaagaaaatgccgaatgagtggagaaaaagcactttaattccaatctataagaacaaggggg-atatacaaaattgcgtgaattataggggaattaagc |
24177555 |
T |
|
| Q |
111 |
ttatgagtcatacc |
124 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
24177556 |
taatgagtcatacc |
24177569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 36544085 - 36544307
Alignment:
| Q |
11 |
cgaagaaaatgttgaacgagtggagaataaacactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattatatagagattaaac |
110 |
Q |
| |
|
|||||||||||| | |||||||||||| || |||||||||| ||||||||||||| ||||| ||||||||||||| || ||| ||| | ||||| | |
|
|
| T |
36544085 |
cgaagaaaatgtcggacgagtggagaagaagcactttaattccaatctataagaacaaggggg-atatacaaaattgcgcgaatcataggggaattaagc |
36544183 |
T |
|
| Q |
111 |
ttatgagtcataccttggagttgtggaaaatagtgagttagcagagactaagaaaatagactcaagttattgaaaaccaatttgattttatgttagagag |
210 |
Q |
| |
|
| |||||||||||| || |||| ||| ||| |||| | ||||||||||| |||||||||||| || |||||||||| ||||||| | ||| |
|
|
| T |
36544184 |
taatgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagactcaagttacggataaccaatttggttttatgcctgggag |
36544283 |
T |
|
| Q |
211 |
atcgaccatggaagctatctactt |
234 |
Q |
| |
|
||||| |||||||| |||||||| |
|
|
| T |
36544284 |
gtcgactatggaagcaatctactt |
36544307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 33667201 - 33667050
Alignment:
| Q |
13 |
aagaaaatgttgaacgagtggagaataaacactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattatatagagattaaactt |
112 |
Q |
| |
|
||||||||||||| ||| |||||| || |||||||||| |||| |||||||| | ||| | |||||||| ||| |||||||||| | |||||||||| |
|
|
| T |
33667201 |
aagaaaatgttgagtgagaggagaagaatcactttaattatgatttataagaaaaagggag-atatacaagatttcgcaaattata-ggggattaaactt |
33667104 |
T |
|
| Q |
113 |
atgagtcataccttggagttgtggaaaatagtgagttagcagagactaagaaaa |
166 |
Q |
| |
|
| ||||||||| || ||||||| |||| ||||| | ||| |||| |||||||| |
|
|
| T |
33667103 |
gtaagtcataccgtgaagttgtgaaaaagagtgattgagcggagattaagaaaa |
33667050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 41148438 - 41148534
Alignment:
| Q |
26 |
acgagtggagaataaacactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattatatagagattaaacttatgagtcatacc |
124 |
Q |
| |
|
|||||||||||| ||||||||||| | ||| |||||||| | |||| ||||||||||||| | | || ||| | |||||||||||||||||||||| |
|
|
| T |
41148438 |
acgagtggagaagaaacactttaactacgatttataagaaaaagggg--atatacaaaattgcgtatatgatagggggattaaacttatgagtcatacc |
41148534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 39 - 204
Target Start/End: Complemental strand, 7789795 - 7789632
Alignment:
| Q |
39 |
aaacactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattatatagagattaaacttatgagtcataccttggagttgtggaa |
138 |
Q |
| |
|
||||||||||||||||||||||||||||| || || ||||||| |||||| ||||| || | ||||||||||||||||||||| | | || ||||| |
|
|
| T |
7789795 |
aaacactttaattttgatctataagaacaaggtgg--tatacaacattgtggaaattttaaggcaattaaacttatgagtcataccattaaattatggaa |
7789698 |
T |
|
| Q |
139 |
aatagtgagttagcagagactaagaaaatagactcaagttattgaaaaccaatttgattttatgtt |
204 |
Q |
| |
|
|| ||||| | | || ||| ||| |||| |||||| ||||| | | || ||||||| ||||||||| |
|
|
| T |
7789697 |
aagagtgattgaacaaagattaacaaaagagactcgagttactcataatcaatttggttttatgtt |
7789632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 201
Target Start/End: Original strand, 37281060 - 37281228
Alignment:
| Q |
31 |
tggagaataaacactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattata-tagagattaaacttatgagtcataccttgga |
129 |
Q |
| |
|
||||||| |||| ||||||||| |||||||||||||| |||| ||||||||||||| || ||||||| ||| |||||||| |||| ||||||| || | |
|
|
| T |
37281060 |
tggagaagaaacgctttaatttcgatctataagaacaagggg--atatacaaaattgcgcgaattataggaga-attaaactaatgaatcataccatgaa |
37281156 |
T |
|
| Q |
130 |
gttgtggaaaatagtgagttagcagagactaagaaaatagactcaagttattgaaaaccaatttgattttat |
201 |
Q |
| |
|
||| || ||| ||||| | | | |||||||| ||| | ||| |||||| ||| |||||||||| |||||| |
|
|
| T |
37281157 |
gttatgataaaaagtgattgaacgaagactaagtaaacaaacttaagttactgataaccaatttggttttat |
37281228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 8179726 - 8179812
Alignment:
| Q |
11 |
cgaagaaaatgttgaacgagtggagaataaacactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattata |
98 |
Q |
| |
|
|||||||||||| |||||||||||| || |||||||||| ||||||||||||| || || ||||||||||||| || ||||||| |
|
|
| T |
8179726 |
cgaagaaaatgtcagacgagtggagaagaagcactttaattccaatctataagaacaaggagg-atatacaaaattgcgcgaattata |
8179812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 11502845 - 11502806
Alignment:
| Q |
28 |
gagtggagaataaacactttaattttgatctataagaaca |
67 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
11502845 |
gagtggagaagaaacactttaatttcgatctataagaaca |
11502806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 13148398 - 13148445
Alignment:
| Q |
155 |
agactaagaaaatagactcaagttattgaaaaccaatttgattttatg |
202 |
Q |
| |
|
|||||||||||| |||||| |||||| || |||||||||||||||||| |
|
|
| T |
13148398 |
agactaagaaaagagactcgagttatcgataaccaatttgattttatg |
13148445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 48623874 - 48623654
Alignment:
| Q |
13 |
aagaaaatgttgaacgagtggagaataaacactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattatatagagattaaactt |
112 |
Q |
| |
|
|||||||||| | | ||||||||||||| |||||||||| ||||||||||||| ||||| ||||||||||||| || ||||||| | ||||| || |
|
|
| T |
48623874 |
aagaaaatgtcgtatgagtggagaataagcactttaattccaatctataagaacaaggggg-atatacaaaattgcgcgaattataggggaattaagcta |
48623776 |
T |
|
| Q |
113 |
atgagtcataccttggagttgtggaaaatagtgagttagcagagactaagaaaatagactcaagttattgaaaaccaatttgattttatgttagagagat |
212 |
Q |
| |
|
|||||||||||| || |||| ||| ||| |||| | ||||||||||| |||||| ||||| || |||||||||| ||||||| | ||| | |
|
|
| T |
48623775 |
atgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaagaagactcgagttacagataaccaatttggttttatgcctgggaggt |
48623676 |
T |
|
| Q |
213 |
cgaccatggaagctatctactt |
234 |
Q |
| |
|
|||| |||||||| |||||||| |
|
|
| T |
48623675 |
cgactatggaagcaatctactt |
48623654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 23907651 - 23907539
Alignment:
| Q |
11 |
cgaagaaaatgttgaacgagtggagaataaacactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattatatagagattaaac |
110 |
Q |
| |
|
||||||||||| || |||||||||||| || |||||||||| || |||||||||| ||||| |||||||||||| || ||||||| | ||||| | |
|
|
| T |
23907651 |
cgaagaaaatgctggacgagtggagaagaagcactttaattccaatttataagaacaaggggg-atatacaaaattccgcgaattataggggaattaagc |
23907553 |
T |
|
| Q |
111 |
ttatgagtcatacc |
124 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
23907552 |
taatgagtcatacc |
23907539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0113 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0113
Description:
Target: scaffold0113; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 13606 - 13385
Alignment:
| Q |
11 |
cgaagaaaatgttgaacgagtggagaataaacactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattatatagagattaaac |
110 |
Q |
| |
|
|||||||||||| | |||||||||||| ||||||||||||| ||||||||||||| ||| |||||||||| | || ||||||| | ||||| | |
|
|
| T |
13606 |
cgaagaaaatgtcggacgagtggagaacaaacactttaattccaatctataagaaca--agggaatatacaaaactacgcgaattataggggaattaagc |
13509 |
T |
|
| Q |
111 |
ttatgagtcataccttggagttgtggaaaatagtgagttagcagagactaagaaaatagactcaagttattgaaaaccaatttgattttatgttagagag |
210 |
Q |
| |
|
| |||||||||||| || |||| ||| |||| |||| | | | ||||||||| | |||||| ||||| || |||||||||| ||||||| | | ||| |
|
|
| T |
13508 |
taatgagtcataccatgaagttatgggaaatggtgattgaacgaagactaagagagaagactccagttacggataaccaatttggttttatgcttgggag |
13409 |
T |
|
| Q |
211 |
atcgaccatggaagctatctactt |
234 |
Q |
| |
|
||||| |||||| | |||||||| |
|
|
| T |
13408 |
gtcgactatggaaacgatctactt |
13385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 124
Target Start/End: Complemental strand, 14167687 - 14167609
Alignment:
| Q |
45 |
tttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattatatagagattaaacttatgagtcatacc |
124 |
Q |
| |
|
||||||| | |||||||||||||||| || |||||||||||| | ||||||||| | | ||||||||||||||||||||| |
|
|
| T |
14167687 |
tttaattattatctataagaacatggagg-atatacaaaattttacaaattatagaaaaattaaacttatgagtcatacc |
14167609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 263
Target Start/End: Original strand, 26290734 - 26290967
Alignment:
| Q |
28 |
gagtggagaataaacactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattatatagagattaaacttatgagtcataccttg |
127 |
Q |
| |
|
||||||||| ||||||||||||| |||| ||||||||| ||||| |||||||||||||||| ||| ||| | ||||| ||||||||||||||| | |
|
|
| T |
26290734 |
gagtggagatgaaacactttaattacgatccataagaacaaggggg-atatacaaaattgtgcgaatgataggggaattaaccttatgagtcataccata |
26290832 |
T |
|
| Q |
128 |
gagttgtggaaaatagtgagttagcagagactaagaaaatagactcaagttattgaaaaccaatttgattttatgttagagagatcgaccatggaagcta |
227 |
Q |
| |
|
|||| |||| ||||| | | | ||||||| |||| || ||||||||||||| || |||||| ||||||||| | || |||| |||||||| | |
|
|
| T |
26290833 |
aagttaataaaaagagtgattgaacgaagactaaaaaaagagtctcaagttattgacaatcaatttagttttatgtttggaaggtcga-tatggaagcga |
26290931 |
T |
|
| Q |
228 |
tctacttgctatggtgtgtgatgaaacaatatcaga |
263 |
Q |
| |
|
|||||||||| | ||||||||| | | |||||||| |
|
|
| T |
26290932 |
tctacttgcttcgatgtgtgatggagcgatatcaga |
26290967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 6082322 - 6082434
Alignment:
| Q |
11 |
cgaagaaaatgttgaacgagtggagaataaacactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattatatagagattaaac |
110 |
Q |
| |
|
|||||||||||| | |||||||||||| || |||||||||| ||||||||||||| |||| ||||||||||||| || ||||||| | ||||| | |
|
|
| T |
6082322 |
cgaagaaaatgtcggacgagtggagaagaagcactttaattccaatctataagaaca-aggggcatatacaaaattgcgcgaattataggggaattaagc |
6082420 |
T |
|
| Q |
111 |
ttatgagtcatacc |
124 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
6082421 |
taatgagtcatacc |
6082434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 5260595 - 5260406
Alignment:
| Q |
13 |
aagaaaatgttgaacgagtggagaataaacactttaattttgatctataagaacatgggggtatatacaaaattgtgcaaattatatagagattaaactt |
112 |
Q |
| |
|
||||||||| | |||||||||||| || ||| |||||| ||||||||||||| ||||| |||||||| | || || ||||||| | ||||| || |
|
|
| T |
5260595 |
aagaaaatgccggacgagtggagaagaatcaccttaattccaatctataagaacaaggggg-atatacaacaatgcgcgaattataggggaattaagcta |
5260497 |
T |
|
| Q |
113 |
atgagtcataccttggagttgtggaaaatagtgagttagcagagactaagaaaatagactcaagttattgaaaaccaatttgattttatgt |
203 |
Q |
| |
|
|||||||||||| || |||| ||| ||| || | | ||| ||||| |||||| ||||||| |||| || |||||||||| |||||||| |
|
|
| T |
5260496 |
atgagtcataccatgaagttatgggaaagggtaattgagcgaagacttagaaaagagactcacgttacggataaccaatttggttttatgt |
5260406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 30243673 - 30243727
Alignment:
| Q |
13 |
aagaaaatgttgaacgagtggagaataaacactttaattttgatctataagaaca |
67 |
Q |
| |
|
|||||||||| ||| |||||||||| |||||||||| || | ||||||||||||| |
|
|
| T |
30243673 |
aagaaaatgtcgaatgagtggagaagaaacactttagttcttatctataagaaca |
30243727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0073
Description:
Target: scaffold0073; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 171
Target Start/End: Complemental strand, 34227 - 34115
Alignment:
| Q |
58 |
tataagaacatgggggtatatacaaaattgtgcaaattatatagagattaaacttatgagtcataccttggagttgtggaaaatagtgagttagcagaga |
157 |
Q |
| |
|
|||||||||| || || |||||||||||||||||||||||| || |||||| |||| |||||| || | ||||||||| || ||||| | | | |||| |
|
|
| T |
34227 |
tataagaacaaggagg-atatacaaaattgtgcaaattataaaggaattaaaattattagtcatgccataaagttgtggacaagagtgattgaacggaga |
34129 |
T |
|
| Q |
158 |
ctaagaaaatagac |
171 |
Q |
| |
|
||| | |||||||| |
|
|
| T |
34128 |
ctagggaaatagac |
34115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 26903 - 26816
Alignment:
| Q |
58 |
tataagaacatgggggtatatacaaaattgtgcaaattatatagagattaaacttatgagtcataccttggagttgtggaaaatagtga |
146 |
Q |
| |
|
|||||||||| || || |||||||||||||||||||||||| || |||||| |||| |||||| || | ||||||||| || ||||| |
|
|
| T |
26903 |
tataagaacaaggagg-atatacaaaattgtgcaaattataaaggaattaaaattattagtcatgccataaagttgtggacaagagtga |
26816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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