View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19932_low_7 (Length: 478)

Name: NF19932_low_7
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19932_low_7
NF19932_low_7
[»] chr8 (17 HSPs)
chr8 (11-462)||(10923482-10923930)
chr8 (151-265)||(9700028-9700142)
chr8 (131-215)||(35220702-35220786)
chr8 (128-221)||(39551182-39551275)
chr8 (152-264)||(6950350-6950462)
chr8 (128-216)||(26473730-26473818)
chr8 (128-167)||(43709277-43709316)
chr8 (202-264)||(20186394-20186456)
chr8 (202-264)||(20205461-20205523)
chr8 (200-263)||(33940094-33940161)
chr8 (226-264)||(35565370-35565408)
chr8 (132-169)||(1433556-1433593)
chr8 (131-184)||(20672757-20672810)
chr8 (132-169)||(27754412-27754449)
chr8 (93-133)||(27645942-27645982)
chr8 (199-263)||(30191072-30191136)
chr8 (34-70)||(35453773-35453809)
[»] chr3 (14 HSPs)
chr3 (128-235)||(14548680-14548787)
chr3 (189-264)||(29600665-29600740)
chr3 (131-193)||(41633367-41633429)
chr3 (156-240)||(47132026-47132110)
chr3 (128-179)||(1816587-1816638)
chr3 (134-264)||(11253511-11253641)
chr3 (130-244)||(36646332-36646446)
chr3 (133-210)||(34254792-34254869)
chr3 (131-188)||(45535224-45535281)
chr3 (199-235)||(2175808-2175844)
chr3 (140-264)||(24281063-24281187)
chr3 (152-196)||(32064467-32064511)
chr3 (38-70)||(37308215-37308247)
chr3 (224-264)||(45541671-45541711)
[»] chr5 (12 HSPs)
chr5 (155-264)||(11297126-11297235)
chr5 (128-221)||(37526172-37526265)
chr5 (128-221)||(37588333-37588426)
chr5 (128-184)||(15309003-15309059)
chr5 (206-264)||(1084069-1084127)
chr5 (128-221)||(37690609-37690703)
chr5 (134-187)||(3970687-3970740)
chr5 (128-169)||(27565375-27565416)
chr5 (131-184)||(41052875-41052928)
chr5 (128-176)||(2568662-2568710)
chr5 (128-164)||(18543226-18543262)
chr5 (128-184)||(40205084-40205140)
[»] chr4 (17 HSPs)
chr4 (128-277)||(2996577-2996726)
chr4 (151-264)||(33534099-33534212)
chr4 (198-264)||(50746049-50746115)
chr4 (199-264)||(6428093-6428158)
chr4 (151-264)||(53315353-53315466)
chr4 (128-184)||(11802538-11802594)
chr4 (38-70)||(55599054-55599086)
chr4 (128-259)||(42866072-42866203)
chr4 (130-240)||(50742790-50742900)
chr4 (132-181)||(825503-825552)
chr4 (128-193)||(11264305-11264370)
chr4 (131-264)||(27721724-27721857)
chr4 (128-265)||(55870271-55870407)
chr4 (128-184)||(4798576-4798632)
chr4 (128-168)||(8468952-8468992)
chr4 (128-176)||(17822883-17822931)
chr4 (141-265)||(27123281-27123405)
[»] scaffold0459 (1 HSPs)
scaffold0459 (151-264)||(6573-6686)
[»] scaffold0366 (1 HSPs)
scaffold0366 (151-264)||(6571-6684)
[»] chr6 (7 HSPs)
chr6 (131-184)||(28641759-28641812)
chr6 (129-178)||(32386579-32386628)
chr6 (38-72)||(4003748-4003782)
chr6 (38-71)||(4247233-4247266)
chr6 (199-264)||(30863321-30863386)
chr6 (128-169)||(31812038-31812079)
chr6 (141-265)||(2460080-2460204)
[»] chr7 (15 HSPs)
chr7 (128-184)||(40439058-40439114)
chr7 (149-252)||(22387838-22387941)
chr7 (128-210)||(46104551-46104633)
chr7 (131-187)||(44821966-44822022)
chr7 (200-263)||(8094382-8094445)
chr7 (419-462)||(29998901-29998944)
chr7 (153-263)||(752998-753108)
chr7 (94-144)||(13438640-13438690)
chr7 (202-264)||(44289973-44290035)
chr7 (142-216)||(46082054-46082128)
chr7 (128-169)||(39505960-39506001)
chr7 (128-169)||(48917371-48917412)
chr7 (131-179)||(20526453-20526501)
chr7 (91-135)||(39771797-39771841)
chr7 (155-263)||(44808189-44808297)
[»] chr1 (16 HSPs)
chr1 (149-263)||(31517671-31517785)
chr1 (223-264)||(2522695-2522736)
chr1 (131-215)||(11639395-11639479)
chr1 (131-262)||(3224430-3224561)
chr1 (149-264)||(30259416-30259531)
chr1 (128-178)||(25479585-25479635)
chr1 (128-178)||(27963386-27963436)
chr1 (203-264)||(7707269-7707330)
chr1 (143-264)||(10439705-10439826)
chr1 (133-178)||(15361049-15361094)
chr1 (141-218)||(19092360-19092436)
chr1 (152-193)||(20713684-20713725)
chr1 (131-264)||(27140485-27140618)
chr1 (154-262)||(4868430-4868537)
chr1 (91-139)||(15515577-15515625)
chr1 (103-139)||(34155336-34155372)
[»] chr2 (24 HSPs)
chr2 (131-184)||(9395137-9395190)
chr2 (131-188)||(19826271-19826328)
chr2 (125-210)||(33192203-33192288)
chr2 (128-184)||(40279411-40279467)
chr2 (134-221)||(1494419-1494506)
chr2 (129-176)||(6993742-6993789)
chr2 (130-193)||(36863626-36863689)
chr2 (131-193)||(1939333-1939395)
chr2 (130-184)||(15977991-15978045)
chr2 (132-166)||(37844810-37844844)
chr2 (131-169)||(42409328-42409366)
chr2 (158-264)||(43456637-43456743)
chr2 (131-184)||(3611233-3611286)
chr2 (128-169)||(9477956-9477997)
chr2 (131-188)||(19629370-19629427)
chr2 (38-78)||(9477867-9477907)
chr2 (133-169)||(21616652-21616688)
chr2 (129-169)||(24097813-24097853)
chr2 (128-168)||(39983346-39983386)
chr2 (128-184)||(40279271-40279327)
chr2 (128-184)||(40279341-40279397)
chr2 (128-216)||(43065428-43065516)
chr2 (131-191)||(43259841-43259901)
chr2 (202-258)||(43808636-43808692)


Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 11 - 462
Target Start/End: Original strand, 10923482 - 10923930
Alignment:
Q  11 cacagacacaagttaattaagccttatataaacaacttaattaa-gtgcatatagcataagttatttctataagttggttttggaaataagttgaaaata 109  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10923482 cacagacacaagttaattaagccttatataaacaacttaattagtgtgcatatagcataagttatttctataagttggttttggaaataagttgaaaata 10923581  T
Q  110 gcttattgatatatcatgagttgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcata 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10923582 gcttattgatatatcatgagttgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcata 10923681  T
Q  210 aactctctcaaattgtcttacaagtgtttatgccactaaataaactcaaataagttgatataaataggtatatgtaatactaataagtgtnnnnnnntca 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||        ||    
T  10923682 aactctctcaaattgtcttacaagtgtttatgccactaaataaactcaaataagtcgatataaataggtatatgtaatactaataagtgtaaaaaaaaca 10923781  T
Q  310 tttttctttaaataggtaatactaattaataagtctnnnnnnnntcatttttctttaaatttgttaaatattttatggaccagaaaaaggattacatttt 409  Q
    ||||||||||||||||||||||    ||||||||||        |||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||    
T  10923782 tttttctttaaataggtaatac----taataagtctaaaaaaaatcatttttctttaaatttgttaaatattttttggaccaaaaaaaggattaaatttt 10923877  T
Q  410 taaaaactgaccttggatatggtgaccctttgattggtttttgaccatatttc 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10923878 taaaaactgaccttggatatggtgaccctttgattggtttttgaccatatttc 10923930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 151 - 265
Target Start/End: Original strand, 9700028 - 9700142
Alignment:
Q  151 gagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtcttacaagtgtttatgccactaaat 250  Q
    ||||||||||||||||||| | ||||||| |||| || ||||| || |||| ||||| || ||||||||||| |||| |||||||||||||| | || ||    
T  9700028 gagagcttatgaaaataaggtgaaaacagcttatggacatgtcataaattgatttcacaagctctctcaaatagtctcacaagtgtttatgctagtagat 9700127  T
Q  251 aaactcaaataagtt 265  Q
    || ||||||||||||    
T  9700128 aagctcaaataagtt 9700142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 35220786 - 35220702
Alignment:
Q  131 tgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactct 215  Q
    ||||||||| |||||||||||||||||||| |||||||| |||||| || |||| |  ||||| || | ||||||||||||||||    
T  35220786 tgttttcataagctattctggagagcttataaaaataagctaaaaatagcttatgggcatgtcataaactgttttcataaactct 35220702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 39551275 - 39551182
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaa 221  Q
    |||||||||||| |||| | ||||||||||||| |||||||| ||||||||| || | || ||||| ||  |||||| |||||| |||| ||||    
T  39551275 agttgttttcataagctttcctggagagcttataaaaataagttaaaaacagcttttggacatgtcataagttgtttccataaattctcccaaa 39551182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 264
Target Start/End: Original strand, 6950350 - 6950462
Alignment:
Q  152 agagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtcttacaagtgtttatgccactaaata 251  Q
    |||||||||| ||||||| | ||||||  |||| || ||||| ||  |||||| ||||| ||||| ||||   ||| |||| ||||||||||| || |||    
T  6950350 agagcttatggaaataagctgaaaacaacttatcgacatgtcataggttgtttacataagctctcccaaacaatctcacaaatgtttatgccagtagata 6950449  T
Q  252 aactcaaataagt 264  Q
    |||||||||||||    
T  6950450 aactcaaataagt 6950462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 26473818 - 26473730
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctc 216  Q
    |||||||||||| |||||| || ||||||||||||||||||| |||||  || |||| || ||||| ||   ||||||||||| |||||    
T  26473818 agttgttttcataagctatcctagagagcttatgaaaataagttaaaactagcttatagacatgtcataagctgttttcataagctctc 26473730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 167
Target Start/End: Original strand, 43709277 - 43709316
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaata 167  Q
    |||||||||||| |||||| ||||||||||||||||||||    
T  43709277 agttgttttcatgagctatcctggagagcttatgaaaata 43709316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 264
Target Start/End: Complemental strand, 20186456 - 20186394
Alignment:
Q  202 ttttcataaactctctcaaattgtcttacaagtgtttatgccactaaataaactcaaataagt 264  Q
    ||||||||||||||||  ||| |||| || ||||| |||||||||| |||| |||||||||||    
T  20186456 ttttcataaactctcttgaatagtctcaccagtgtctatgccactagataagctcaaataagt 20186394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 264
Target Start/End: Complemental strand, 20205523 - 20205461
Alignment:
Q  202 ttttcataaactctctcaaattgtcttacaagtgtttatgccactaaataaactcaaataagt 264  Q
    ||||||||||||||||  ||| |||| || ||||| |||||||||| |||| |||||||||||    
T  20205523 ttttcataaactctcttgaatagtctcaccagtgtctatgccactagataagctcaaataagt 20205461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 33940094 - 33940161
Alignment:
Q  200 tgttttcataaactctctcaaattgtcttacaagtg----tttatgccactaaataaactcaaataag 263  Q
    ||||||||||| |||||||||||||||| |||||||    ||||||||| ||| ||| ||||||||||    
T  33940094 tgttttcataagctctctcaaattgtctcacaagtgcttatttatgccaataagtaagctcaaataag 33940161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 264
Target Start/End: Original strand, 35565370 - 35565408
Alignment:
Q  226 cttacaagtgtttatgccactaaataaactcaaataagt 264  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  35565370 cttacaagtgtttttgccactaaacaaactcaaataagt 35565408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 1433556 - 1433593
Alignment:
Q  132 gttttcattagctattctggagagcttatgaaaataag 169  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  1433556 gttttcataagctatcctggagagcttatgaaaataag 1433593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 20672757 - 20672810
Alignment:
Q  131 tgttttcattagctattctggagagcttatgaaaataagataaaaacagtttat 184  Q
    |||||| || |||||| |||||||||||||||||||||| | ||||||| ||||    
T  20672757 tgtttttataagctatcctggagagcttatgaaaataagctgaaaacagcttat 20672810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 27754412 - 27754449
Alignment:
Q  132 gttttcattagctattctggagagcttatgaaaataag 169  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  27754412 gttttcataagctattttggagagcttatgaaaataag 27754449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 27645942 - 27645982
Alignment:
Q  93 gaaataagttgaaaatagcttattgatatatcatgagttgt 133  Q
    ||||||||||||||||||||||| ||||| |||| ||||||    
T  27645942 gaaataagttgaaaatagcttatagatatgtcataagttgt 27645982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 30191136 - 30191072
Alignment:
Q  199 ttgttttcataaactctctcaaattgtcttacaagtgtttatgccactaaataaactcaaataag 263  Q
    |||||| ||||| ||||| ||||  |||| ||||||| |||||||| || |||||||||||||||    
T  30191136 ttgtttccataagctctcccaaacagtctaacaagtgcttatgccaatagataaactcaaataag 30191072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 35453809 - 35453773
Alignment:
Q  34 ttatataaacaacttaattaagtgcatatagcataag 70  Q
    ||||||||||||||||||||||||  |||||||||||    
T  35453809 ttatataaacaacttaattaagtgattatagcataag 35453773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 128 - 235
Target Start/End: Complemental strand, 14548787 - 14548680
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtct 227  Q
    |||||||||||| || |||||||||||||||||| ||||||| | |||||||  |||| | ||||| ||| |||||||||||| ||||||||||  ||||    
T  14548787 agttgttttcataagttattctggagagcttatggaaataagctgaaaacagcctattaaaatgtcatacgttgttttcataagctctctcaaacagtct 14548688  T
Q  228 tacaagtg 235  Q
     |||||||    
T  14548687 cacaagtg 14548680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 264
Target Start/End: Complemental strand, 29600740 - 29600665
Alignment:
Q  189 atgtcttacattgttttcataaactctctcaaattgtcttacaagtgtttatgccactaaataaactcaaataagt 264  Q
    ||||| || ||||||||||||||||||||||||   ||| | || |||| |||||| |||||||||||||||||||    
T  29600740 atgtcataaattgttttcataaactctctcaaacaatctaataactgttcatgccagtaaataaactcaaataagt 29600665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 41633367 - 41633429
Alignment:
Q  131 tgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgatatgtc 193  Q
    ||||||||| ||||||| ||||||||||||||||||||| | |||||| ||||| || |||||    
T  41633367 tgttttcatcagctattttggagagcttatgaaaataagctgaaaacaatttatagacatgtc 41633429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 240
Target Start/End: Original strand, 47132026 - 47132110
Alignment:
Q  156 cttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtcttacaagtgtttat 240  Q
    ||||| |||||||| | |||||||||||| |||||| | ||  ||||||||||||  |||||||||| |||||||| ||| ||||    
T  47132026 cttataaaaataagctgaaaacagtttatggatatgacataagttgttttcataagttctctcaaatagtcttacatgtggttat 47132110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 1816587 - 1816638
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataagataaaaacag 179  Q
    |||||||||||| |||||| ||||||||||||| |||||||| | |||||||    
T  1816587 agttgttttcataagctatactggagagcttatcaaaataagctgaaaacag 1816638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 264
Target Start/End: Original strand, 11253511 - 11253641
Alignment:
Q  134 tttcattagctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtcttacaag 233  Q
    |||||| |||||| || ||||||||| | ||||| | | |||||||||||| |||||||| ||  ||||||| ||||| |||  ||||  ||||  ||||    
T  11253511 tttcataagctatcctagagagcttagggaaataggctgaaaacagtttatagatatgtcataagttgtttttataaattctgccaaacagtctctcaag 11253610  T
Q  234 tgtttatgccactaaataaactcaaataagt 264  Q
    || |||||| | || |||| |||||||||||    
T  11253611 tgcttatgctagtagataatctcaaataagt 11253641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 36646446 - 36646332
Alignment:
Q  130 ttgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtctta 229  Q
    |||||||||| |||||| || ||||| ||||  ||||||||| ||||||| |||| || ||| | ||  | |||| ||||| ||||| ||||| ||||||    
T  36646446 ttgttttcataagctatcctagagagtttatagaaataagatgaaaacagcttatggacatgccataagtggtttccataagctctcccaaatagtctta 36646347  T
Q  230 caagtgtttatgcca 244  Q
    ||||||  |||||||    
T  36646346 caagtgcctatgcca 36646332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 34254869 - 34254792
Alignment:
Q  133 ttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataa 210  Q
    ||||||| |||||||||||||| |||||| ||||||| | |||  || |||| |||||||| || | |||||||||||    
T  34254869 ttttcataagctattctggagaacttatgtaaataagctgaaagtagcttatggatatgtcataaactgttttcataa 34254792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 45535281 - 45535224
Alignment:
Q  131 tgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgat 188  Q
    ||||||||| |||||| |||||||| ||||||||||||| | ||| ||| ||||||||    
T  45535281 tgttttcataagctatactggagagtttatgaaaataagttgaaatcagattattgat 45535224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 2175844 - 2175808
Alignment:
Q  199 ttgttttcataaactctctcaaattgtcttacaagtg 235  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  2175844 ttgttttcataaactatctcaaatagtcttacaagtg 2175808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 264
Target Start/End: Original strand, 24281063 - 24281187
Alignment:
Q  140 tagctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtcttacaagtgttta 239  Q
    |||||||  |||||||||||||||| |||| | ||||||  |||| || || || ||  |||||||||||| ||||||||||   ||  ||||||| |||    
T  24281063 tagctatcatggagagcttatgaaagtaagttgaaaacaacttatggagatatcataagttgttttcataagctctctcaaacaatcacacaagtgctta 24281162  T
Q  240 tgccactaaataaactcaaataagt 264  Q
    | ||| || ||| ||||||||||||    
T  24281163 taccagtagatagactcaaataagt 24281187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 32064467 - 32064511
Alignment:
Q  152 agagcttatgaaaataagataaaaacagtttattgatatgtctta 196  Q
    |||||||||||||||||| | |||||||||||| ||||| |||||    
T  32064467 agagcttatgaaaataagttgaaaacagtttatggatatatctta 32064511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 37308247 - 37308215
Alignment:
Q  38 ataaacaacttaattaagtgcatatagcataag 70  Q
    ||||||||||||||||||||| |||||||||||    
T  37308247 ataaacaacttaattaagtgcttatagcataag 37308215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 45541671 - 45541711
Alignment:
Q  224 gtcttacaagtgtttatgccactaaataaactcaaataagt 264  Q
    ||||||||||||||||| ||| ||||||| |||||||||||    
T  45541671 gtcttacaagtgtttataccattaaataagctcaaataagt 45541711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 155 - 264
Target Start/End: Complemental strand, 11297235 - 11297126
Alignment:
Q  155 gcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtcttacaagtgtttatgccactaaataaac 254  Q
    ||||||||||||||| | |||| || | ||||| ||||||||  |||||| ||||| |||| |||||  |||||||||||||||||||||||| |||| |    
T  11297235 gcttatgaaaataagctgaaaatagctaattgacatgtcttaagttgtttccataagctctttcaaacagtcttacaagtgtttatgccactagataagc 11297136  T
Q  255 tcaaataagt 264  Q
    | ||||||||    
T  11297135 ttaaataagt 11297126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 37526265 - 37526172
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaa 221  Q
    |||||||||||| || | |||||||||||||||| ||||||| | ||||||| ||||| | ||||| ||  |||| ||||||| ||||||||||    
T  37526265 agttgttttcataagttgttctggagagcttatggaaataagctgaaaacagcttattaacatgtcataggttgtattcataagctctctcaaa 37526172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 37588426 - 37588333
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaa 221  Q
    |||||||||||| || |||||||||||||||||| ||||||| | ||||||| ||||| | || || ||  |||| ||||||| ||||||||||    
T  37588426 agttgttttcataagttattctggagagcttatggaaataagctgaaaacagcttattaacatttcataggttgtattcataagctctctcaaa 37588333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 15309059 - 15309003
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataagataaaaacagtttat 184  Q
    |||||||||||||||||||  | |||| |||||||||||||||| ||||||| ||||    
T  15309059 agttgttttcattagctatcattgagatcttatgaaaataagatgaaaacaggttat 15309003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 264
Target Start/End: Complemental strand, 1084127 - 1084069
Alignment:
Q  206 cataaactctctcaaattgtcttacaagtgtttatgccactaaataaactcaaataagt 264  Q
    ||||||||||||||||  || | ||||||| ||||| || |||||||||||||||||||    
T  1084127 cataaactctctcaaacagtttcacaagtgcttatgtcagtaaataaactcaaataagt 1084069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 37690703 - 37690609
Alignment:
Q  128 agttgttttcatta-gctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaa 221  Q
    |||||||||||| | | |||| ||||||||||||| ||||||| | ||||||| ||||| | ||||| ||  |||| ||||||| ||||||||||    
T  37690703 agttgttttcataaagttattatggagagcttatggaaataagctgaaaacagcttattaacatgtcataggttgtattcataagctctctcaaa 37690609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 3970740 - 3970687
Alignment:
Q  134 tttcattagctattctggagagcttatgaaaataagataaaaacagtttattga 187  Q
    |||||| |||||| |||||||||||||||||||||| | |||| || |||||||    
T  3970740 tttcataagctatactggagagcttatgaaaataagctgaaaatagcttattga 3970687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 27565416 - 27565375
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataag 169  Q
    ||||||||| || || ||||||||||||||||||||||||||    
T  27565416 agttgttttaataagatattctggagagcttatgaaaataag 27565375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 41052875 - 41052928
Alignment:
Q  131 tgttttcattagctattctggagagcttatgaaaataagataaaaacagtttat 184  Q
    ||||||||| | ||||| ||||||||||||| ||||||| |||||| |||||||    
T  41052875 tgttttcataacctattttggagagcttatggaaataagttaaaaatagtttat 41052928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 2568662 - 2568710
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataagataaaaa 176  Q
    |||||||||||| ||||||  ||||||||| ||||||||||| ||||||    
T  2568662 agttgttttcataagctatcatggagagctaatgaaaataagctaaaaa 2568710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 18543262 - 18543226
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaa 164  Q
    |||||||||||| |||||| |||||||||||||||||    
T  18543262 agttgttttcataagctatcctggagagcttatgaaa 18543226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 40205140 - 40205084
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataagataaaaacagtttat 184  Q
    |||||||||||| |||||| |||||||||||||  ||||||| | ||||||| ||||    
T  40205140 agttgttttcataagctatcctggagagcttatagaaataagctgaaaacagattat 40205084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 128 - 277
Target Start/End: Original strand, 2996577 - 2996726
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtct 227  Q
    |||||||||||| ||||||  |||||||| |||||||||||| | |||| || |||| || ||||| ||  |||||||||||| ||||||||||  ||||    
T  2996577 agttgttttcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggacatgtcataagttgttttcataagctctctcaaacagtct 2996676  T
Q  228 tacaagtgtttatgccactaaataaactcaaataagttgatataaatagg 277  Q
     | ||||| ||||| || |||||||  ||||||||| | || ||||||||    
T  2996677 caaaagtgcttatgtcaataaataagttcaaataagctaatctaaatagg 2996726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 264
Target Start/End: Complemental strand, 33534212 - 33534099
Alignment:
Q  151 gagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtcttacaagtgtttatgccactaaat 250  Q
    ||||||||||||||||||| | ||||||  |||| ||||||||  |  |||||||||||| |||||||||||  ||| ||||||  ||||| ||||| ||    
T  33534212 gagagcttatgaaaataagctgaaaacaacttatggatatgtcacaatttgttttcataagctctctcaaatactctcacaagtacttatgtcactagat 33534113  T
Q  251 aaactcaaataagt 264  Q
    || |||||||||||    
T  33534112 aagctcaaataagt 33534099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 264
Target Start/End: Original strand, 50746049 - 50746115
Alignment:
Q  198 attgttttcataaactctctcaaattgtcttacaagtgtttatgccactaaataaactcaaataagt 264  Q
    ||||||||||||||||| | ||||| |||| ||||||| |||||| | || ||||||||||||||||    
T  50746049 attgttttcataaactcacacaaatagtctcacaagtgcttatgcaagtagataaactcaaataagt 50746115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 6428093 - 6428158
Alignment:
Q  199 ttgttttcataaactctctcaaattgtcttacaagtgtttatgccactaaataaactcaaataagt 264  Q
    |||||||||||| |||||||||| ||||| ||||||| |||| ||| || |||| |||||||||||    
T  6428093 ttgttttcataatctctctcaaactgtctcacaagtgcttataccaatatataagctcaaataagt 6428158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 151 - 264
Target Start/End: Original strand, 53315353 - 53315466
Alignment:
Q  151 gagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtcttacaagtgtttatgccactaaat 250  Q
    ||||||||||||||||||| |||||| || |||| || ||||  ||  |||||||||||| ||||| ||||| |||||| | ||| |||| ||| |  ||    
T  53315353 gagagcttatgaaaataagttaaaaatagcttatggacatgtgatatgttgttttcataagctctcacaaatagtcttatatgtgcttataccagtggat 53315452  T
Q  251 aaactcaaataagt 264  Q
    || |||||||||||    
T  53315453 aagctcaaataagt 53315466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 11802538 - 11802594
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataagataaaaacagtttat 184  Q
    |||||||||||| ||||||| |||||||||||||| |||||| | ||||||| ||||    
T  11802538 agttgttttcataagctattatggagagcttatgagaataagctgaaaacagcttat 11802594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 55599054 - 55599086
Alignment:
Q  38 ataaacaacttaattaagtgcatatagcataag 70  Q
    |||||||||||||||||||||||||||||||||    
T  55599054 ataaacaacttaattaagtgcatatagcataag 55599086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 259
Target Start/End: Original strand, 42866072 - 42866203
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtct 227  Q
    |||||||||||| |||||| || ||||||||||| || |||| ||||| ||  |||| || || || || | ||||| |||||  |||| ||||  ||||    
T  42866072 agttgttttcataagctatccttgagagcttatggaagtaagctaaaagcatcttatggacatatcatagaatgtttacataagttctcccaaagagtct 42866171  T
Q  228 tacaagtgtttatgccactaaataaactcaaa 259  Q
     | | |||||||||||| ||||||||||||||    
T  42866172 caaaggtgtttatgccagtaaataaactcaaa 42866203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 240
Target Start/End: Complemental strand, 50742900 - 50742790
Alignment:
Q  130 ttgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtctta 229  Q
    |||||||||| |||||| ||||||||||||||||||| || | |||||||  |||  | ||||| |  | |||||||||||  |||||||||  |||| |    
T  50742900 ttgttttcataagctatcctggagagcttatgaaaatgagttgaaaacagggtatgaacatgtcatgaactgttttcataagttctctcaaacagtctaa 50742801  T
Q  230 caagtgtttat 240  Q
    |||||| ||||    
T  50742800 caagtgcttat 50742790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 825552 - 825503
Alignment:
Q  132 gttttcattagctattctggagagcttatgaaaataagataaaaacagtt 181  Q
    |||||||| ||||||| |||||| |||||||||||||| | |||||||||    
T  825552 gttttcataagctattttggagaacttatgaaaataagctgaaaacagtt 825503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 11264305 - 11264370
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgatatgtc 193  Q
    |||||||||||| ||| || || ||||||||||| ||||||| | |||||||||||| || |||||    
T  11264305 agttgttttcataagccatcctagagagcttatggaaataagttgaaaacagtttatggacatgtc 11264370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 264
Target Start/End: Original strand, 27721724 - 27721857
Alignment:
Q  131 tgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtcttac 230  Q
    ||||||||| || ||| |||||||||||  ||||||||| | ||||||| |||| |||||||| ||  | ||||| |||| |||||| |||   ||| ||    
T  27721724 tgttttcataagttatcctggagagcttgcgaaaataagctgaaaacagcttatggatatgtcataagtagtttttataagctctcttaaacaatctcac 27721823  T
Q  231 aagtgtttatgccactaaataaactcaaataagt 264  Q
    ||||||| || |||||  || | |||||||||||    
T  27721824 aagtgttaataccacttgattagctcaaataagt 27721857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 265
Target Start/End: Complemental strand, 55870407 - 55870271
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtct 227  Q
    |||||||||||| ||||| ||  |||||||||| || ||||  | ||||||| |||| || | ||| || | | ||||||||| || |||||||  ||||    
T  55870407 agttgttttcataagctaatcaagagagcttat-aatataattttaaaacagcttatggacaggtcataaacttttttcataagctatctcaaagagtct 55870309  T
Q  228 tacaagtgtttatgccactaaataaactcaaataagtt 265  Q
     |||| |||||||| || || |||||||||||||||||    
T  55870308 cacaaatgtttatgtcattagataaactcaaataagtt 55870271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 4798632 - 4798576
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataagataaaaacagtttat 184  Q
    |||||||||||| ||||||  ||||||||||||| ||||||| | ||||||| ||||    
T  4798632 agttgttttcataagctatcttggagagcttatgcaaataagctcaaaacagcttat 4798576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 8468952 - 8468992
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataa 168  Q
    |||||||||||| || |||||| ||||||||||||||||||    
T  8468952 agttgttttcataagttattctagagagcttatgaaaataa 8468992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 17822931 - 17822883
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataagataaaaa 176  Q
    |||||||||||| ||||||  |||||| |||||||||||||| ||||||    
T  17822931 agttgttttcataagctatcttggagaacttatgaaaataagctaaaaa 17822883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 265
Target Start/End: Complemental strand, 27123405 - 27123281
Alignment:
Q  141 agctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtcttacaagtgtttat 240  Q
    ||||||| ||||||||||||| ||||||| | ||||||  |||  || ||||| ||  |||||| ||||| ||||||||||  |||| ||||||  ||||    
T  27123405 agctattatggagagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttat 27123306  T
Q  241 gccactaaataaactcaaataagtt 265  Q
    || | |  |||| ||||||||||||    
T  27123305 gctagtttataagctcaaataagtt 27123281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 264
Target Start/End: Original strand, 6573 - 6686
Alignment:
Q  151 gagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtcttacaagtgtttatgccactaaat 250  Q
    |||||||||||||| ||||   ||||||| |||||  |||||| ||  |||||||||||| |||||||||| ||||| ||||||| |||| ||| || ||    
T  6573 gagagcttatgaaagtaagcagaaaacagcttatttgtatgtcataacttgttttcataatctctctcaaactgtctcacaagtgattataccaatatat 6672  T
Q  251 aaactcaaataagt 264  Q
    || |||||||||||    
T  6673 aagctcaaataagt 6686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 264
Target Start/End: Original strand, 6571 - 6684
Alignment:
Q  151 gagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtcttacaagtgtttatgccactaaat 250  Q
    |||||||||||||| ||||   ||||||| |||||  |||||| ||  |||||||||||| |||||||||| ||||| ||||||| |||| ||| || ||    
T  6571 gagagcttatgaaagtaagcagaaaacagcttatttgtatgtcataacttgttttcataatctctctcaaactgtctcacaagtgattataccaatatat 6670  T
Q  251 aaactcaaataagt 264  Q
    || |||||||||||    
T  6671 aagctcaaataagt 6684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 28641812 - 28641759
Alignment:
Q  131 tgttttcattagctattctggagagcttatgaaaataagataaaaacagtttat 184  Q
    |||||||| ||||||||||| |||||||||||||||||| ||||||||| ||||    
T  28641812 tgttttcaatagctattctgcagagcttatgaaaataagctaaaaacagcttat 28641759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 32386628 - 32386579
Alignment:
Q  129 gttgttttcattagctattctggagagcttatgaaaataagataaaaaca 178  Q
    |||||||||||||| ||| |||||||||||||||||||||| | ||||||    
T  32386628 gttgttttcattagttatcctggagagcttatgaaaataagctgaaaaca 32386579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 4003782 - 4003748
Alignment:
Q  38 ataaacaacttaattaagtgcatatagcataagtt 72  Q
    ||||||||||||||||||||| |||||||||||||    
T  4003782 ataaacaacttaattaagtgcttatagcataagtt 4003748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 4247266 - 4247233
Alignment:
Q  38 ataaacaacttaattaagtgcatatagcataagt 71  Q
    ||||||||||||||||||||| ||||||||||||    
T  4247266 ataaacaacttaattaagtgcttatagcataagt 4247233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 30863321 - 30863386
Alignment:
Q  199 ttgttttcataaactctctcaaattgtcttacaagtgtttatgccactaaataaactcaaataagt 264  Q
    |||||||||||| ||||  ||||  |||| |||||||||||||||| ||||||  |||||||||||    
T  30863321 ttgttttcataagctctaccaaagagtctaacaagtgtttatgccaataaataggctcaaataagt 30863386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 31812079 - 31812038
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataag 169  Q
    |||||||||||| ||||||  |||||||||||||||||||||    
T  31812079 agttgttttcataagctatcttggagagcttatgaaaataag 31812038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 265
Target Start/End: Complemental strand, 2460204 - 2460080
Alignment:
Q  141 agctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtcttacaagtgtttat 240  Q
    ||||||| ||||||||||||| ||||||| | ||||||  |||  || ||||| ||  |||||| ||||| ||||||||||  |||| ||||||  ||||    
T  2460204 agctattatggagagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttat 2460105  T
Q  241 gccactaaataaactcaaataagtt 265  Q
    || | |  |||| ||||||||||||    
T  2460104 gctagtttataagctcaaataagtt 2460080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 40439058 - 40439114
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataagataaaaacagtttat 184  Q
    ||||||||||||||||||| ||| |||||||||| ||||||| ||||||||| ||||    
T  40439058 agttgttttcattagctatcctgaagagcttatggaaataagttaaaaacagcttat 40439114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 22387941 - 22387838
Alignment:
Q  149 tggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtcttacaagtgtttatgccactaa 248  Q
    ||||||||||||| ||||||| ||||||||||||||  | ||| | ||  |||||||||||| ||||| ||||  |||| ||| ||||||||| || |||    
T  22387941 tggagagcttatggaaataagttaaaaacagtttataaacatgccataagttgttttcataagctctcccaaacagtctcacacgtgtttatgtcagtaa 22387842  T
Q  249 ataa 252  Q
    ||||    
T  22387841 ataa 22387838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 210
Target Start/End: Complemental strand, 46104633 - 46104551
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataa 210  Q
    |||||||||||| |||||| ||| |||||||||||||||||| |  ||||| |||||||| ||||| |   ||||||||||||    
T  46104633 agttgttttcataagctatgctgaagagcttatgaaaataagctggaaacattttattgacatgtcatgagttgttttcataa 46104551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 44821966 - 44822022
Alignment:
Q  131 tgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattga 187  Q
    ||||||||| |||||||||||||| |||||||||||||| | ||||||  |||||||    
T  44821966 tgttttcataagctattctggagaacttatgaaaataagttgaaaacaacttattga 44822022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 8094382 - 8094445
Alignment:
Q  200 tgttttcataaactctctcaaattgtcttacaagtgtttatgccactaaataaactcaaataag 263  Q
    |||||||||||| |||||||||| |||| ||||||| |||||| | || |||| ||||||||||    
T  8094382 tgttttcataaaatctctcaaatagtctcacaagtgcttatgctagtagataagctcaaataag 8094445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 462
Target Start/End: Complemental strand, 29998944 - 29998901
Alignment:
Q  419 accttggatatggtgaccctttgattggtttttgaccatatttc 462  Q
    |||||||||||||||||||||| || |||||||| |||||||||    
T  29998944 accttggatatggtgacccttttataggtttttgtccatatttc 29998901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 263
Target Start/End: Original strand, 752998 - 753108
Alignment:
Q  153 gagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtcttacaagtgtttatgccactaaataa 252  Q
    |||| ||||||||| || ||||||||| ||||||||||||| || | |||||||||||  ||| ||||   |||||| | ||| |||||| | || ||||    
T  752998 gagcatatgaaaattagctaaaaacagcttattgatatgtcataaactgttttcataagttctttcaatcagtcttagaggtgcttatgcaagtagataa 753097  T
Q  253 actcaaataag 263  Q
     ||||||||||    
T  753098 gctcaaataag 753108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 13438690 - 13438640
Alignment:
Q  94 aaataagttgaaaatagcttattgatatatcatgagttgttttcattagct 144  Q
    |||||||||||||||||||||| ||||| ||||  ||||||||||| ||||    
T  13438690 aaataagttgaaaatagcttatagatatgtcataggttgttttcatcagct 13438640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 264
Target Start/End: Complemental strand, 44290035 - 44289973
Alignment:
Q  202 ttttcataaactctctcaaattgtcttacaagtgtttatgccactaaataaactcaaataagt 264  Q
    ||||||||||||||||  ||| |||| || ||||| |||||||||| |||| |||||||||||    
T  44290035 ttttcataaactctcttgaatagtctcaccagtgtctatgccactagataagctcaaataagt 44289973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 46082054 - 46082128
Alignment:
Q  142 gctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctc 216  Q
    |||||||||||||||||||||||||||| | ||||||  |||| |  ||||| ||  |||||||||||| |||||    
T  46082054 gctattctggagagcttatgaaaataagctgaaaacaacttatggtcatgtcataagttgttttcataagctctc 46082128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 39505960 - 39506001
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataag 169  Q
    |||||||||||| ||||||||||||||| ||||| |||||||    
T  39505960 agttgttttcataagctattctggagagtttatggaaataag 39506001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 48917412 - 48917371
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataag 169  Q
    |||||||||||| ||||||  |||||||||||||||||||||    
T  48917412 agttgttttcataagctatcttggagagcttatgaaaataag 48917371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 20526453 - 20526501
Alignment:
Q  131 tgttttcattagctattctggagagcttatgaaaataagataaaaacag 179  Q
    ||||||||| ||||||| |||||| || ||||||||||| |||||||||    
T  20526453 tgttttcataagctattttggagaactaatgaaaataagctaaaaacag 20526501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 39771797 - 39771841
Alignment:
Q  91 tggaaataagttgaaaatagcttattgatatatcatgagttgttt 135  Q
    ||||||||||||||||| ||||||| || ||||||| ||||||||    
T  39771797 tggaaataagttgaaaacagcttatggacatatcataagttgttt 39771841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 263
Target Start/End: Original strand, 44808189 - 44808297
Alignment:
Q  155 gcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtcttacaagtgtttatgccactaaataaac 254  Q
    ||||||||||||||| | ||||||| |||| || ||||| ||  || |||||||||  ||| |||||  |||| |||| || |||||| | ||||||| |    
T  44808189 gcttatgaaaataagctgaaaacaggttatggacatgtcataagttattttcataaggtctatcaaacagtctgacaactgcttatgctaataaataagc 44808288  T
Q  255 tcaaataag 263  Q
    |||||||||    
T  44808289 tcaaataag 44808297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 31517785 - 31517671
Alignment:
Q  149 tggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtcttacaagtgtttatgccactaa 248  Q
    ||||||||||||||||||||| | ||||||| ||||  | ||||| |   ||||||| ||||  |||| ||||  |||| ||||||| |||||||| |||    
T  31517785 tggagagcttatgaaaataagctgaaaacagcttatgaacatgtcatgagttgttttgataagttctcccaaacagtctcacaagtgcttatgccagtaa 31517686  T
Q  249 ataaactcaaataag 263  Q
    |||| ||||||||||    
T  31517685 ataagctcaaataag 31517671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 2522695 - 2522736
Alignment:
Q  223 tgtcttacaagtgtttatgccactaaataaactcaaataagt 264  Q
    |||||||||||||||||||||| || ||||||||||||||||    
T  2522695 tgtcttacaagtgtttatgccagtagataaactcaaataagt 2522736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 11639479 - 11639395
Alignment:
Q  131 tgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactct 215  Q
    ||||| ||| || |||||| ||||||||||||||||||| ||||||||| |||| || ||||| ||   ||||||||||| ||||    
T  11639479 tgtttgcataagttattctagagagcttatgaaaataagctaaaaacagcttatggacatgtcataagctgttttcataagctct 11639395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 262
Target Start/End: Original strand, 3224430 - 3224561
Alignment:
Q  131 tgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtcttac 230  Q
    |||||| || ||||||||| |||| |||||||||||||| | | ||||  |||| || ||||| ||  | ||||  ||||| |||||||||| || | ||    
T  3224430 tgtttttataagctattctagagaacttatgaaaataagctgagaacaacttatggacatgtcataagtagtttgtataaattctctcaaatagtgtcac 3224529  T
Q  231 aagtgtttatgccactaaataaactcaaataa 262  Q
    ||||| ||||| |  |||||||||||||||||    
T  3224530 aagtgcttatgtcggtaaataaactcaaataa 3224561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 264
Target Start/End: Complemental strand, 30259531 - 30259416
Alignment:
Q  149 tggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtcttacaagtgtttatgccactaa 248  Q
    ||||||||||||| ||||||| | |||||| |||||||| ||||| ||  ||||||  |||| |||| |||||  | |||| | |||||||||||  ||     
T  30259531 tggagagcttatggaaataagttgaaaacaatttattgacatgtcgtaagttgtttctataagctctttcaaacagccttaaatgtgtttatgccggtag 30259432  T
Q  249 ataaactcaaataagt 264  Q
     |||||||||||||||    
T  30259431 gtaaactcaaataagt 30259416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 25479585 - 25479635
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataagataaaaaca 178  Q
    |||||||||||| |||||| || ||||||||||||||||||| | ||||||    
T  25479585 agttgttttcataagctatcctagagagcttatgaaaataagctgaaaaca 25479635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 27963436 - 27963386
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataagataaaaaca 178  Q
    |||||||||||| ||||||| ||||||||||||  ||||||| ||||||||    
T  27963436 agttgttttcataagctattatggagagcttatataaataagctaaaaaca 27963386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 7707269 - 7707330
Alignment:
Q  203 tttcataaactctctcaaattgtcttacaagtgtttatgccactaaataaactcaaataagt 264  Q
    ||||||||||||||||||||  |||||||||| ||||| | | || ||||| ||||||||||    
T  7707269 tttcataaactctctcaaataatcttacaagtatttatactagtagataaattcaaataagt 7707330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 264
Target Start/End: Original strand, 10439705 - 10439826
Alignment:
Q  143 ctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtcttacaagtgtttatgc 242  Q
    |||| |||||||| ||||| ||||||| | ||| ||| |||| || ||||| ||  |||||||||||| ||||| ||||| |||| |||||   |||||     
T  10439705 ctatcctggagagtttatggaaataagctgaaagcagattatggacatgtcatagtttgttttcataagctctcccaaatagtctcacaagatcttatgg 10439804  T
Q  243 cactaaataaactcaaataagt 264  Q
    |  ||||||| |||||||||||    
T  10439805 ccataaataagctcaaataagt 10439826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 15361049 - 15361094
Alignment:
Q  133 ttttcattagctattctggagagcttatgaaaataagataaaaaca 178  Q
    |||||||| ||||| |||||||||||||||||||||| | ||||||    
T  15361049 ttttcattggctatcctggagagcttatgaaaataagctgaaaaca 15361094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 19092436 - 19092360
Alignment:
Q  141 agctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctc 218  Q
    |||||| ||| |||||||||||||||||| | ||||||||||| ||| ||||| || | | |||||||||||| ||||    
T  19092436 agctatcctgaagagcttatgaaaataaggtgaaaacagttta-tgacatgtcatagactattttcataaactgtctc 19092360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 20713684 - 20713725
Alignment:
Q  152 agagcttatgaaaataagataaaaacagtttattgatatgtc 193  Q
    |||||||||||||||||||||||||||| |||| || |||||    
T  20713684 agagcttatgaaaataagataaaaacagcttatggacatgtc 20713725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 264
Target Start/End: Original strand, 27140485 - 27140618
Alignment:
Q  131 tgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtcttac 230  Q
    |||||| || ||||||  ||||||||||||| ||||||| | ||||||  |||| || ||||| ||   ||||| | ||||||||||||||  | |||||    
T  27140485 tgtttttataagctatcatggagagcttatgcaaataagctgaaaacaacttatggacatgtcataagctgtttccttaaactctctcaaagagacttac 27140584  T
Q  231 aagtgtttatgccactaaataaactcaaataagt 264  Q
    || |||||||| || || |||| |||| ||||||    
T  27140585 aattgtttatgtcaatagataagctcatataagt 27140618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 262
Target Start/End: Original strand, 4868430 - 4868537
Alignment:
Q  154 agcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtcttacaagtgtttatgccactaaataaa 253  Q
    |||||||| ||||||| | ||||||  ||||||| ||||| ||  |||||| ||||||||||||||||  |||| |||||||  |||| || || |||||    
T  4868430 agcttatgtaaataagttgaaaacaacttattgacatgtcataagttgttt-cataaactctctcaaacagtctcacaagtgcctatgtcaatagataaa 4868528  T
Q  254 ctcaaataa 262  Q
     ||||||||    
T  4868529 ttcaaataa 4868537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 15515577 - 15515625
Alignment:
Q  91 tggaaataagttgaaaatagcttattgatatatcatgagttgttttcat 139  Q
    ||||||||| ||||||||||| |||||| || |||| ||||||||||||    
T  15515577 tggaaataaattgaaaatagcgtattgacatgtcataagttgttttcat 15515625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 34155336 - 34155372
Alignment:
Q  103 gaaaatagcttattgatatatcatgagttgttttcat 139  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  34155336 gaaaatagcttattgatatatcataagtagttttcat 34155372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 9395137 - 9395190
Alignment:
Q  131 tgttttcattagctattctggagagcttatgaaaataagataaaaacagtttat 184  Q
    |||||||||||| ||||||| |||||||||||||||||| | ||||||| ||||    
T  9395137 tgttttcattagttattctgtagagcttatgaaaataagctgaaaacagcttat 9395190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 19826271 - 19826328
Alignment:
Q  131 tgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgat 188  Q
    ||||||||| |||||| |||||||| ||||||||||||| | ||| ||||||||||||    
T  19826271 tgttttcataagctatactggagagtttatgaaaataagttgaaatcagtttattgat 19826328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 125 - 210
Target Start/End: Original strand, 33192203 - 33192288
Alignment:
Q  125 atgagttgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataa 210  Q
    ||||| || |||||| |||||| ||||||||||||| || ||||| | ||||||| |||| |||||||| || | |||||||||||    
T  33192203 atgagctggtttcataagctatcctggagagcttataaatataagctgaaaacagcttatggatatgtcataaactgttttcataa 33192288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 40279411 - 40279467
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataagataaaaacagtttat 184  Q
    |||||||||||| ||||||  |||||| |||||||||||||| | ||||||||||||    
T  40279411 agttgttttcataagctatattggagaacttatgaaaataagttgaaaacagtttat 40279467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 1494506 - 1494419
Alignment:
Q  134 tttcattagctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaa 221  Q
    |||||||||| ||  ||| ||| || |||||||||| |||||||||||||| || ||||| ||   ||||||||||| ||||||||||    
T  1494506 tttcattagccatcatggcgaggttttgaaaataagctaaaaacagtttatggacatgtcataagctgttttcataagctctctcaaa 1494419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 6993789 - 6993742
Alignment:
Q  129 gttgttttcattagctattctggagagcttatgaaaataagataaaaa 176  Q
    ||||||||||| |||||| || ||||||||||||||||||| ||||||    
T  6993789 gttgttttcataagctatgcttgagagcttatgaaaataagctaaaaa 6993742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 36863689 - 36863626
Alignment:
Q  130 ttgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgatatgtc 193  Q
    |||||||||| ||||||  ||||||||||||||||||||| |  ||| ||||||| ||||||||    
T  36863689 ttgttttcataagctatcttggagagcttatgaaaataagttggaaatagtttatagatatgtc 36863626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 1939395 - 1939333
Alignment:
Q  131 tgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgatatgtc 193  Q
    ||||||||| |||||| |||||||||||||| ||||||| | ||||||| |||| || |||||    
T  1939395 tgttttcataagctatactggagagcttatggaaataagttgaaaacagcttatggacatgtc 1939333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 15977991 - 15978045
Alignment:
Q  130 ttgttttcattagctattctggagagcttatgaaaataagataaaaacagtttat 184  Q
    |||||||||| ||||||| ||||||| ||||||||||||| | |||||| |||||    
T  15977991 ttgttttcataagctattttggagagattatgaaaataagctgaaaacaatttat 15978045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 37844810 - 37844844
Alignment:
Q  132 gttttcattagctattctggagagcttatgaaaat 166  Q
    |||||||||||||||||| ||||||||||||||||    
T  37844810 gttttcattagctattctagagagcttatgaaaat 37844844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 42409366 - 42409328
Alignment:
Q  131 tgttttcattagctattctggagagcttatgaaaataag 169  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  42409366 tgttttcataagttattctggagagcttatgaaaataag 42409328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 264
Target Start/End: Complemental strand, 43456743 - 43456637
Alignment:
Q  158 tatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctctcaaattgtcttacaagtgtttatgccactaaataaactca 257  Q
    |||| ||||||| | |||||||||||| || ||||| |   ||||||||| || |||| |||||  ||||||||||||||||||  | |||||||  |||    
T  43456743 tatggaaataagctgaaaacagtttatggacatgtcatgagttgttttcacaagctctttcaaacagtcttacaagtgtttatgtgagtaaataagttca 43456644  T
Q  258 aataagt 264  Q
    |||||||    
T  43456643 aataagt 43456637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 3611233 - 3611286
Alignment:
Q  131 tgttttcattagctattctggagagcttatgaaaataagataaaaacagtttat 184  Q
    ||||||||  ||||||  |||||| |||||||||||||| ||||||||||||||    
T  3611233 tgttttcacaagctatcttggagaacttatgaaaataagctaaaaacagtttat 3611286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 9477956 - 9477997
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataag 169  Q
    |||||||||||| |||||| |||||||| |||||||||||||    
T  9477956 agttgttttcataagctatcctggagaggttatgaaaataag 9477997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 19629370 - 19629427
Alignment:
Q  131 tgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgat 188  Q
    ||||||||| |||||| |||||||| ||||||||||||| | ||| ||| ||||||||    
T  19629370 tgttttcataagctatactggagagtttatgaaaataagttgaaatcagcttattgat 19629427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 9477867 - 9477907
Alignment:
Q  38 ataaacaacttaattaagtgcatatagcataagttatttct 78  Q
    ||||||||||||||||||||  |||||||||||| ||||||    
T  9477867 ataaacaacttaattaagtgtttatagcataagtgatttct 9477907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 21616688 - 21616652
Alignment:
Q  133 ttttcattagctattctggagagcttatgaaaataag 169  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  21616688 ttttcattagctattttggagaacttatgaaaataag 21616652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 24097813 - 24097853
Alignment:
Q  129 gttgttttcattagctattctggagagcttatgaaaataag 169  Q
    ||||||||||| || ||| ||||||||||||||||||||||    
T  24097813 gttgttttcataagttatcctggagagcttatgaaaataag 24097853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 39983346 - 39983386
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataa 168  Q
    |||||||||||| |||||| |||||||||| ||||||||||    
T  39983346 agttgttttcataagctatcctggagagctaatgaaaataa 39983386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 40279271 - 40279327
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataagataaaaacagtttat 184  Q
    |||||||||||| ||||||  |||||| ||||||||||| || | ||||||||||||    
T  40279271 agttgttttcataagctatattggagaacttatgaaaattagctgaaaacagtttat 40279327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 40279341 - 40279397
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataagataaaaacagtttat 184  Q
    |||||||||||| ||||||  |||||| ||||||||||| || | ||||||||||||    
T  40279341 agttgttttcataagctatattggagaacttatgaaaattagctgaaaacagtttat 40279397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 43065516 - 43065428
Alignment:
Q  128 agttgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgatatgtcttacattgttttcataaactctc 216  Q
    |||||||||||| || |||  ||||||||||||  ||||||| | |||||| ||||| || ||||| ||  |||||||||||| |||||    
T  43065516 agttgttttcataagttatcgtggagagcttattgaaataagctgaaaacaatttatggacatgtcataagttgttttcataagctctc 43065428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 43259841 - 43259901
Alignment:
Q  131 tgttttcattagctattctggagagcttatgaaaataagataaaaacagtttattgatatg 191  Q
    |||||||||||| |||  || |||||||||| ||||||| ||||||||| ||||| |||||    
T  43259841 tgttttcattaggtatcttgaagagcttatggaaataagctaaaaacagcttattaatatg 43259901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 43808636 - 43808692
Alignment:
Q  202 ttttcataaactctctcaaattgtcttacaagtgtttatgccactaaataaactcaa 258  Q
    ||||||||| ||||||||||| ||||||||||| |||||| || | |||||| ||||    
T  43808636 ttttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataaagtcaa 43808692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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