View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19932_low_8 (Length: 476)

Name: NF19932_low_8
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19932_low_8
NF19932_low_8
[»] chr7 (7 HSPs)
chr7 (112-240)||(8145377-8145505)
chr7 (1-87)||(8145294-8145380)
chr7 (363-413)||(8145628-8145678)
chr7 (111-187)||(39990619-39990695)
chr7 (141-189)||(1292131-1292179)
chr7 (64-98)||(31176300-31176334)
chr7 (107-187)||(21819584-21819664)
[»] chr5 (1 HSPs)
chr5 (107-189)||(35695197-35695279)
[»] chr6 (2 HSPs)
chr6 (107-174)||(12808407-12808474)
chr6 (142-187)||(7776594-7776639)
[»] chr4 (1 HSPs)
chr4 (140-187)||(47044889-47044936)
[»] chr3 (1 HSPs)
chr3 (105-158)||(24073222-24073275)
[»] chr1 (1 HSPs)
chr1 (122-174)||(31239015-31239067)


Alignment Details
Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 112 - 240
Target Start/End: Original strand, 8145377 - 8145505
Alignment:
Q  112 ataaaggaaatacatggttttggtatggctttttcaatttcaattatactcttgaacaaatttgcttataagaatgctcagggccaatcgaacatttgat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||    
T  8145377 ataaaggaaatacatggttttggtatggctttttcaatttcaattatactcttgaacaaatttgcttgtaagaatgctcagggccgatcgaacacttgat 8145476  T
Q  212 gaggcctaaagcgaactccaaattgaggc 240  Q
    |||||||||||||||||||||||||||||    
T  8145477 gaggcctaaagcgaactccaaattgaggc 8145505  T

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Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 8145294 - 8145380
Alignment:
Q  1 taatcaaaattaaaatttcataaaaatcatagttcaaagtttacaggcgttagtgtaataaataaaagcagaaagacagacacataa 87  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8145294 taatcaaaattaaaatttcataaaaatcataattcaaagtttacgggcgttagtgtaataaataaaagcagaaagacagacacataa 8145380  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 363 - 413
Target Start/End: Original strand, 8145628 - 8145678
Alignment:
Q  363 cgacactaaagacaattcatttaatcttgagacattgcaaatgcgaaattg 413  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8145628 cgacactaaagacaattcatttaatcttgagacattgcaaatgtgaaattg 8145678  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 39990695 - 39990619
Alignment:
Q  111 tataaaggaaatacatggttttggtatggctttttcaatttcaattatactcttgaacaaatttgcttataagaatg 187  Q
    |||||||||||||||||||||||   ||||||||||| ||||| |||||| ||| || |||||||| ||||||||||    
T  39990695 tataaaggaaatacatggttttgaagtggctttttcactttcagttatacccttaaataaatttgcctataagaatg 39990619  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 1292179 - 1292131
Alignment:
Q  141 tttttcaatttcaattatactcttgaacaaatttgcttataagaatgct 189  Q
    ||||||| || ||||||||||||| ||||||||| ||||||||||||||    
T  1292179 tttttcacttccaattatactctttaacaaatttacttataagaatgct 1292131  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 98
Target Start/End: Complemental strand, 31176334 - 31176300
Alignment:
Q  64 aaaagcagaaagacagacacataagtgtctgtctt 98  Q
    |||||||||||||||| ||||||||||||||||||    
T  31176334 aaaagcagaaagacagtcacataagtgtctgtctt 31176300  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 187
Target Start/End: Complemental strand, 21819664 - 21819584
Alignment:
Q  107 tatatataaaggaaatacatggttttggtatggctttttcaatttcaattatactcttgaacaaatttgcttataagaatg 187  Q
    |||||||||||  || ||||| ||||||  | | ||||||| ||||||||||| || | |||||||||| |||||||||||    
T  21819664 tatatataaagagaaaacatgattttgggttagttttttcactttcaattataatcataaacaaatttgattataagaatg 21819584  T

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Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 107 - 189
Target Start/End: Original strand, 35695197 - 35695279
Alignment:
Q  107 tatatataaaggaaatacatggttttggtatggctttttcaatttcaattatactcttgaacaaatttgcttataagaatgct 189  Q
    ||||||||||||||||| ||||||||||  ||||||||||| || ||||||||| ||| ||||||||||| ||||||||||||    
T  35695197 tatatataaaggaaatatatggttttgggctggctttttcacttccaattatacccttaaacaaatttgcatataagaatgct 35695279  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 12808407 - 12808474
Alignment:
Q  107 tatatataaaggaaatacatggttttggtatggctttttcaatttcaattatactcttgaacaaattt 174  Q
    |||||||||| |||||| ||||||||||  ||||||||||| |||||||||||  ||| |||||||||    
T  12808407 tatatataaaagaaatatatggttttggggtggctttttcattttcaattatatccttaaacaaattt 12808474  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 7776594 - 7776639
Alignment:
Q  142 ttttcaatttcaattatactcttgaacaaatttgcttataagaatg 187  Q
    |||||| |||||||||||||||| ||||| | ||||||||||||||    
T  7776594 ttttcattttcaattatactctttaacaattctgcttataagaatg 7776639  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 47044936 - 47044889
Alignment:
Q  140 ctttttcaatttcaattatactcttgaacaaatttgcttataagaatg 187  Q
    |||||||| |||||||||||| |||||||||||||| |||||||||||    
T  47044936 ctttttcactttcaattatacccttgaacaaatttgattataagaatg 47044889  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 24073222 - 24073275
Alignment:
Q  105 tatatatataaaggaaatacatggttttggtatggctttttcaatttcaattat 158  Q
    |||||||||||||| ||||||||||||| |  ||||||||||| ||||||||||    
T  24073222 tatatatataaagggaatacatggtttttgggtggctttttcactttcaattat 24073275  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 31239015 - 31239067
Alignment:
Q  122 tacatggttttggtatggctttttcaatttcaattatactcttgaacaaattt 174  Q
    |||||||||||||  || |||||||| |||||||||||| ||| |||||||||    
T  31239015 tacatggttttgggctgactttttcactttcaattatacccttaaacaaattt 31239067  T

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