View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19932_low_9 (Length: 472)
Name: NF19932_low_9
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19932_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 21 - 464
Target Start/End: Complemental strand, 40043780 - 40043337
Alignment:
| Q |
21 |
tacgtgtcattctttttggacaatgaatctataaccgtcaggaatatccaacttagtattcttttcacaacctctaatggacttgttttgttttaatttt |
120 |
Q |
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| T |
40043780 |
tacgtgtcattctttttggacaatgaatctataaccgtcaggaatatccaacttagtattcttttcacaacctctaatgaacttgttttgttttaatttt |
40043681 |
T |
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| Q |
121 |
aatgataccatattcccttcaataaatgtgtcatttagttaataatttcaaccgtctgacctaaatcaacgattgagataatttaaaagtaatttttagt |
220 |
Q |
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| T |
40043680 |
aatgataccatattccctgcaataaatgtgtcatttagttaataatttcaaccgtccgacctaaatcaacgattgagataatttaaaagtagtttttagt |
40043581 |
T |
|
| Q |
221 |
aaagtgtaatttgagatgttcggtctcaaatc-ataattgagattgactatcgtgtaaaactatgtttcattattcgtatatggaatccaaattcatctt |
319 |
Q |
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| T |
40043580 |
aatgtgtaatttgagatgttcggtctcaaatcaataatcgagattgactatcgtgtaaaactatgtttcattattcatatatggaatccaaattcatttt |
40043481 |
T |
|
| Q |
320 |
tgaannnnnnnnnnggttgatttgactagaccacaagctttcaaacaagaaaattgttagctattaggatttgactt-aaagaatgattaacattgttat |
418 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40043480 |
tga--ttatttttttgttgatttgactagaccacaagctttcaaacaagaaaattgttagctattaggatttgacttaaaagaatgattaacattgttat |
40043383 |
T |
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| Q |
419 |
aaattataatattattcaagtcaacttgacatcattcatattcttc |
464 |
Q |
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| T |
40043382 |
aaattataatattattcaagtcaacttgacatcattcattttcttc |
40043337 |
T |
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