View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19933_high_4 (Length: 250)
Name: NF19933_high_4
Description: NF19933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19933_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 5834243 - 5834481
Alignment:
| Q |
1 |
gacctgaaaataggtcaattgttccttttggaggtcttgaataggtcatggttgattctggtacaacaccaacatccattgatgaaactgaaacctgata |
100 |
Q |
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| T |
5834243 |
gacctgaaaataggtcaattgttccttttggaggtcttgaataggtcatggttgattctggtacaacaccaacatccattgatgaaactgaaacctgata |
5834342 |
T |
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| Q |
101 |
agaaaagaaaatgaaacaaatattagtgatnnnnnnnnggaggtatcaaaggtttctgaaactaaaactcaataaagaatttccatgtagcactaatat- |
199 |
Q |
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|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
5834343 |
agaaaagaaaatgaaa-aaatattagtgataaaaaaaaggaggtatcaaaggtttctgaaactaaaactcaatataatttttccatgtagcactaatatc |
5834441 |
T |
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| Q |
200 |
catattcatgaaactgattagaccaataattgacattctt |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
5834442 |
catattcatgaaactgattagaccaataattgacattctt |
5834481 |
T |
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