View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19933_low_2 (Length: 466)
Name: NF19933_low_2
Description: NF19933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19933_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 214 - 453
Target Start/End: Original strand, 41336884 - 41337123
Alignment:
| Q |
214 |
gctccatatacattggggggttttgcatccagacaaagaatttggctaggttacttcgtactatatgtgattcttaatttcgtcaaagaggttcttggaa |
313 |
Q |
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| T |
41336884 |
gctccatatacattggggggttttgcatccagacaaagaatttggctaggttacttcgtactatatgtgattcttaatttcgtcaaagaggttcttggaa |
41336983 |
T |
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| Q |
314 |
acttgagagtgacagtgatttaatgttcacaggtagttcttttttacttgtcctcaaaataaaatacagaccggtaaggttggaattccaagaaagctca |
413 |
Q |
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| T |
41336984 |
acttgagagtgacagtgatttaatgttcacaggtagttcttttttacttgtcctcaaaataaaatacagaccggtaaggttggaattccaagaaagctca |
41337083 |
T |
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| Q |
414 |
aatcattgtacttttagcagatttgtgttggcaagttttt |
453 |
Q |
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| T |
41337084 |
aatcattgtacttttagcagatttgtgttggcaagttttt |
41337123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 41336671 - 41336844
Alignment:
| Q |
1 |
taatattatcttaattttatagaaatgaannnnnnnnngactaagttttagaaatgaagtagtactcatcatgcaaacccgcaaattaaattagatcttt |
100 |
Q |
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| T |
41336671 |
taatattatcttaattttatagaaatgaattttttttttactaagttttagaaatgaagtaatactcatcatgcaaacccgcaaattaaattagatcttt |
41336770 |
T |
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| Q |
101 |
tgcatatagctagatattattccatatagttgagataatctaaataatattcaaaatatgcatagtaaggtaag |
174 |
Q |
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| T |
41336771 |
tgcatatagctagatattattccatatagttgagataatctaaataatattcaaaatatgcatagtaaggtaag |
41336844 |
T |
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