View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19933_low_3 (Length: 462)
Name: NF19933_low_3
Description: NF19933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19933_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 451
Target Start/End: Complemental strand, 7778807 - 7778374
Alignment:
| Q |
18 |
atctaatgtttgcatcacagttctatctaaattgacatttaattttctagcagacttcaatttttctgctatttttgagttagcttgtatcataatcatt |
117 |
Q |
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| T |
7778807 |
atctaatgtttgcatcacagttctatctaaattgacatttaattttctagcagacttcaatttttctgctatttttgagttagcttgtatcataatcatt |
7778708 |
T |
|
| Q |
118 |
ttcataatgttcttcatcggtcacattttctcttatttcttannnnnnnnctttgttcagtcttattgtcattccttgattattgtattgtttcatgtgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7778707 |
ttcataatgttcttcatcggtcacattttctcttatttcttattttttttctttgttcagtcttattgtcattccttgattattgtattgtttcatgtgt |
7778608 |
T |
|
| Q |
218 |
atttaaaaataattcagcaagcagtatagtttaataaatagttgacataatgggcatgttgggttgttggttttcatgaccgattctatcttttttgttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7778607 |
atttaaaaataattcagcaagcagtatagtttaataaatagttgacataatgggcatgttgggttgttggttttcatgaccgattctatcttttttgttt |
7778508 |
T |
|
| Q |
318 |
gtatctttggtgtgaagctcttttatctttatttagttattgtggactttattgcacttatatcatgttaagtttaaggacaaattacactaacttcctt |
417 |
Q |
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| T |
7778507 |
gtatatttggtgtgaagctcttttatctttatttagttattgtggactttattgcacttatatcatgttaagtttaaggacaaattacactaacttcctt |
7778408 |
T |
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| Q |
418 |
taagatatgtcaaaatgtcactcacactcccttt |
451 |
Q |
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| T |
7778407 |
taagatatgtcaaaatgtcactcacactcccttt |
7778374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 7816567 - 7816472
Alignment:
| Q |
18 |
atctaatgtttgcatcacagttctatctaaattgacatttaattttctagcagacttcaatttttctgctatttttgagttagcttgtatcataat |
113 |
Q |
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| T |
7816567 |
atctaatgtttgcatcacagttctagcaaaattgacatttaattttctagcagactttaatttttctgctatttttgagttagcttgtatcataat |
7816472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 265 - 357
Target Start/End: Complemental strand, 7772785 - 7772694
Alignment:
| Q |
265 |
taatgggcatgttgggttgttggttttcatgaccgattctatcttttttgtttgtatctttggtgtgaagctcttttatctttatttagttat |
357 |
Q |
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| T |
7772785 |
taatgggcatgttgg-ttgttggttttcatgaccgattctatcttttttgtttgtatatttggtgtgaagctcttttttctttatttagttat |
7772694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 328 - 452
Target Start/End: Complemental strand, 7793207 - 7793083
Alignment:
| Q |
328 |
tgtgaagctcttttatctttatttagttattgtggactttattgcacttatatcatgttaagtttaaggacaaattacactaacttcctttaagatatgt |
427 |
Q |
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|||||||||||||| ||||||||||| ||||||||| ||||| |||||||||||||||||||||| |||||||||| |||||||||| |||||| | |
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| T |
7793207 |
tgtgaagctctttttcctttatttagtgtttgtggactgtattgtgcttatatcatgttaagtttaagcgcaaattacacgaacttcctttgagatatat |
7793108 |
T |
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| Q |
428 |
caaaatgtcactcacactccctttg |
452 |
Q |
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| T |
7793107 |
taaaatgtcactcacaccccctttg |
7793083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 252 - 330
Target Start/End: Complemental strand, 7793313 - 7793236
Alignment:
| Q |
252 |
taaatagttgacataatgggcatgttgggttgttggttttcatgaccgattctatcttttttgtttgtatctttggtgt |
330 |
Q |
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| T |
7793313 |
taaattgttgacataatgggcatgttgg-ttgttggttttcttgaccgattctatcttttttgtttgtatctttggtgt |
7793236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 252 - 324
Target Start/End: Original strand, 7909562 - 7909633
Alignment:
| Q |
252 |
taaatagttgacataatgggcatgttgggttgttggttttcatgaccgattctatcttttttgtttgtatctt |
324 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7909562 |
taaatagttgacataattggcatgttgg-ttgttggttttcatgaccgattctatcttttttgtttgtttctt |
7909633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 444
Target Start/End: Original strand, 7909668 - 7909784
Alignment:
| Q |
328 |
tgtgaagctcttttatctttatttagttattgtggactttattgcacttatatcatgttaagtttaaggacaaattacactaacttcctttaagatatgt |
427 |
Q |
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||||||||| ||| |||||| |||| ||||||||||||| | ||||| |||||||||||||||| |||||| |||||||||| || |||||||| |
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| T |
7909668 |
tgtgaagctttttggtctttacatagtgtttgtggactttatcgtgcttatttcatgttaagtttaagagaaaattaaactaacttcccttgagatatgt |
7909767 |
T |
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| Q |
428 |
caaaatgtcactcacac |
444 |
Q |
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| T |
7909768 |
caaaatgtcattcacac |
7909784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 7905664 - 7905703
Alignment:
| Q |
18 |
atctaatgtttgcatcacagttctatctaaattgacattt |
57 |
Q |
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| T |
7905664 |
atctaatgtttgcatcaaagttctatctaaattgacattt |
7905703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 451
Target Start/End: Complemental strand, 8514376 - 8514324
Alignment:
| Q |
399 |
aaattacactaacttcctttaagatatgtcaaaatgtcactcacactcccttt |
451 |
Q |
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| T |
8514376 |
aaattacactaacctcccttgagatatgtcaaaatgtcgctcacacccccttt |
8514324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 7793535 - 7793499
Alignment:
| Q |
21 |
taatgtttgcatcacagttctatctaaattgacattt |
57 |
Q |
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|||||||||||||| ||||||| |||||||||||||| |
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| T |
7793535 |
taatgtttgcatcaaagttctagctaaattgacattt |
7793499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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