View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19933_low_4 (Length: 384)
Name: NF19933_low_4
Description: NF19933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19933_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 7668092 - 7668448
Alignment:
| Q |
19 |
taagttggtgaaaatgaaatcatgactgcataaggatttcatgtatatgcctaataataagatttttatgtatttcttcatcatggttatcaatttgaga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7668092 |
taagttggtgaaaatgaaatcatgactgcataaggatttcatgtatatgcctaataataagatttttatgtatttcttcatcatggttatcaatttgaga |
7668191 |
T |
|
| Q |
119 |
ttcatg-aagaactattttctgaatcataagcaagatcttattatgaataatagaaaataagataattttaagtaaaaaccagtgatagggctaaattat |
217 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
7668192 |
ttcatggaagaactattttctgaatcataagcaagatcttattatgaataatagaaaataagatatttttaagtaaaaacaagtgatagggctaaattat |
7668291 |
T |
|
| Q |
218 |
aagttgatataacatacctcaattgccatacatccccctagaccaagatttggttgcattggatgtgctgcatctcctaataaagtaactctcccaattc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7668292 |
aagttgatataacatacctcaattgccatacatccccctagaccaagatttggttgcattggatgtgctgcatctcctaataaagtaactctcccaattc |
7668391 |
T |
|
| Q |
318 |
cccaagtgttgataatgtctctatcatatatatccctctgcagaatcatattctctg |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7668392 |
cccaagtgttgataatgtctctatcatatatatccctctgcagaatcatattctctg |
7668448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 339
Target Start/End: Complemental strand, 32789618 - 32789586
Alignment:
| Q |
307 |
tctcccaattccccaagtgttgataatgtctct |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
32789618 |
tctcccaattccccaagtgttgataatgtctct |
32789586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University