View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19933_low_5 (Length: 317)
Name: NF19933_low_5
Description: NF19933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19933_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 33 - 302
Target Start/End: Complemental strand, 42780575 - 42780296
Alignment:
| Q |
33 |
tattactaaaacaatcatttttaacctaaatattgtaacgaatatgctctaaataatgtgtttagtaaagaatgtatgtgcaaaat-----acttgtaca |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || | | | |
|
|
| T |
42780575 |
tattactaaaacaatcatttttaacctaaatattgtaacgaatatgctctaaataatgtgtttagtaaagaatgtacgtgcaaaactgacgacgtatgta |
42780476 |
T |
|
| Q |
128 |
tataaatcaaatagtaat-----actgctccaaaggtttggtctaaagactaatagtattcatttatacatggaagagtattgcgatggtctggtaagag |
222 |
Q |
| |
|
||||||| ||||| || | | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42780475 |
tataaattaaataatactttaaaatagttccaaaggtttggtctaaagactaatagtattcatttatacatggaagagtattgcgatggtctggtaagag |
42780376 |
T |
|
| Q |
223 |
gagacagtaagattttattttagaaaaatatccaaccaatctaatagtaaaaatttgcaccgaagttttttagttgaagg |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42780375 |
gagacagtaagattttattttagaaaaatatccaaccaatctaatagtaaaaatttgcaccgaagttttttagttgaagg |
42780296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University