View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19933_low_7 (Length: 245)
Name: NF19933_low_7
Description: NF19933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19933_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 3151625 - 3151405
Alignment:
| Q |
17 |
cagtttgttcgacaatagtatcattggtatcaattccaagcttctgatgtagatgtacaactgttgccaaaacattaggcatcacaaaatgatcgtcgga |
116 |
Q |
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| T |
3151625 |
cagtttgttcgacaatagtgtcattggtatcaattccaagcttctgatgtagatgtacaactgttgccaaaacattaggcatcacaaaaagatcgtcgga |
3151526 |
T |
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| Q |
117 |
aatgataaaagtagcagtttcttcaacaaagccatttcctaaactcaaatgttctggagctacatctttgtccagtattccaccacaatagcatttttga |
216 |
Q |
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| T |
3151525 |
aatgataaaagtagcagtttcttcaacaaagccatttcctaaactcagatgttctggagccacatctttgtccagtactctaccacaataacatttttga |
3151426 |
T |
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| Q |
217 |
ttcctcatagtgctcaaaaga |
237 |
Q |
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| T |
3151425 |
ttcctcatagtgctcaaaaga |
3151405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 137
Target Start/End: Complemental strand, 21194788 - 21194706
Alignment:
| Q |
55 |
agcttctgatgtagatgtacaactgttgccaaaacattaggcatcacaaaatgatcgtcggaaatgataaaagtagcagtttc |
137 |
Q |
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| T |
21194788 |
agcttttgaagtagttgtataactgttccaaaatcattaggcatcacacaaagatcgtcggaaataataaatgcagcagtttc |
21194706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 21200041 - 21199931
Alignment:
| Q |
55 |
agcttctgatgtagatgtacaactgttgccaaaacattaggcatcacaaaatgatcgtcggaaatgataaaagtagcagtttcttcaacaaagccatttc |
154 |
Q |
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| T |
21200041 |
agcttgtgaagtagttgtataactgtcccaaaaacattaggcatcacataaagatcgtctgaaataataaatgcagcagtttccttaacaaaaccgcttc |
21199942 |
T |
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| Q |
155 |
ctaaactcaaa |
165 |
Q |
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| T |
21199941 |
ctaagctcaaa |
21199931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 165
Target Start/End: Complemental strand, 24284554 - 24284442
Alignment:
| Q |
53 |
caagcttctgatgtagatgtacaactgttgccaaaacattaggcatcacaaaatgatcgtcggaaatgataaaagtagcagtttcttcaacaaagccatt |
152 |
Q |
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| T |
24284554 |
caagcttttgaagtagtggtataactgttccaaaaacattaggcatcacagtaagatcatcagaaattataaatgtggcggtttccttagcaaagccatt |
24284455 |
T |
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| Q |
153 |
tcctaaactcaaa |
165 |
Q |
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||||| ||||||| |
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| T |
24284454 |
tcctagactcaaa |
24284442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 24232218 - 24232270
Alignment:
| Q |
85 |
aaaacattaggcatcacaaaatgatcgtcggaaatgataaaagtagcagtttc |
137 |
Q |
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|||||||||||||| ||| || |||| || |||||||||||||||||| |||| |
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| T |
24232218 |
aaaacattaggcataacacaaagatcatcagaaatgataaaagtagcattttc |
24232270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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