View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19934_high_24 (Length: 369)
Name: NF19934_high_24
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19934_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 10 - 353
Target Start/End: Original strand, 38967359 - 38967702
Alignment:
| Q |
10 |
attatactatgcaaatggaaaattaaagaaaacggaatcttgttaattgaggattgaagtacaagcactaatgtgattatattgactaagcctactaaat |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38967359 |
attacactatgcaaatggaaaattaaagaaaacggaatcttgttaattgaggattgaagtacaagcactaatgtgattatattgactaagcctactaaat |
38967458 |
T |
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| Q |
110 |
cataatcaagaaaaaccagaatcagatatgtcctaatagttacagatacaactaaataagtactgagaatactaaattggtgccaatcacatatttacaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38967459 |
cataatcaagaaaaaccagaatcagatatgtcctaatagttacagatacaactaaataagtactgagaatactaaattggtgccaatcacatatttacaa |
38967558 |
T |
|
| Q |
210 |
cactctcctcaagcaggtgattggatgctaagcattcccagcttgcaatatcatggaaccgctttgtgggaagtccatctcaaatttttatacccgaatg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38967559 |
cactctcctcaagcaggtgattggatgctaagcattcccagcttgcaatatcatggaaccgctttgtgggaagtccatctcaaatttttatacccgaatg |
38967658 |
T |
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| Q |
310 |
catgagcaaggaagatgggaaagtttagtttgtgaactgctaaa |
353 |
Q |
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| T |
38967659 |
catgagcaaggaagatgggaaagtttagtttgtgaactgctaaa |
38967702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 27 - 267
Target Start/End: Complemental strand, 39899677 - 39899430
Alignment:
| Q |
27 |
gaaaattaaagaaaacggaatcttgttaattgaggattgaagtacaagcactaatgtgattatattgactaagcctactaaatcataatcaagaaaaacc |
126 |
Q |
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| T |
39899677 |
gaaaattagagaaaacggaatcttgttaattgataattgaagtacaagcactaatgtgattatattgactaagcctaataaatcataatcaagaaaaaca |
39899578 |
T |
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| Q |
127 |
agaatcagatatgtcctaatagttacagatacaactaaataagtactgagaatact-------aaattggtgccaatcacatatttacaacactctcctc |
219 |
Q |
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|||| ||||| |||| ||||| | |||||| |||||||||||| |||||||||||| |||||||| ||||| ||||||||||||||||| ||| |
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| T |
39899577 |
agaaccagatctgtcataataatcacagattcaactaaataagcactgagaatactaaatcctaaattggtaccaattacatatttacaacactccactc |
39899478 |
T |
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| Q |
220 |
aagcaggtgattggatgctaagcattcccagcttgcaatatcatggaa |
267 |
Q |
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|||||||| | ||| ||| || |||||||||||||||||||| ||||| |
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| T |
39899477 |
aagcaggtcactgggtgccaatcattcccagcttgcaatatcctggaa |
39899430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 26 - 147
Target Start/End: Complemental strand, 39912601 - 39912480
Alignment:
| Q |
26 |
ggaaaattaaagaaaacggaatcttgttaattgaggattgaagtacaagcactaatgtgattatattgactaagcctactaaatcataatcaagaaaaac |
125 |
Q |
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||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||| || |||||||||||||| |
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| T |
39912601 |
ggaaaattagagaaaacggaatcttgttaattgatgattgaagtacaagcactaatgtgattatattgactaagctgaataactcgtaatcaagaaaaac |
39912502 |
T |
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| Q |
126 |
cagaatcagatatgtcctaata |
147 |
Q |
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|||||||||| | |||||||| |
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| T |
39912501 |
aagaatcagatctttcctaata |
39912480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 39866320 - 39866256
Alignment:
| Q |
44 |
gaatcttgttaattgaggattgaagtacaagcactaatgtgattatattgactaagcctactaaa |
108 |
Q |
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| T |
39866320 |
gaatcttatcaattgaggattgatgtacaagcactaatgtgattatatagaataagcctaataaa |
39866256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 39727690 - 39727734
Alignment:
| Q |
47 |
tcttgttaattgaggattgaagtacaagcactaatgtgattatat |
91 |
Q |
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| T |
39727690 |
tcttgtcaattgaggatttatgtacaagcactaatgtgattatat |
39727734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 39849306 - 39849260
Alignment:
| Q |
45 |
aatcttgttaattgaggattgaagtacaagcactaatgtgattatat |
91 |
Q |
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|||||| ||||||||| |||||||||||| | ||||||||||||||| |
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| T |
39849306 |
aatctttttaattgagaattgaagtacaaaccctaatgtgattatat |
39849260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 39858696 - 39858659
Alignment:
| Q |
46 |
atcttgttaattgaggattgaagtacaagcactaatgt |
83 |
Q |
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| T |
39858696 |
atcttgttaattgaggattgaaatacaagtactaatgt |
39858659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 125
Target Start/End: Original strand, 29624477 - 29624527
Alignment:
| Q |
75 |
cactaatgtgattatattgactaagcctactaaatcataatcaagaaaaac |
125 |
Q |
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||||||||||||||||| | ||||||||| |||||| |||||||||||||| |
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| T |
29624477 |
cactaatgtgattatataggctaagcctaataaatcttaatcaagaaaaac |
29624527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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