View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19934_high_26 (Length: 356)
Name: NF19934_high_26
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19934_high_26 |
 | |
|
| [»] scaffold0373 (1 HSPs) |
| | |
|
| [»] scaffold0552 (1 HSPs) |
| | |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
| [»] scaffold0813 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 19)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 337
Target Start/End: Original strand, 6587835 - 6588161
Alignment:
| Q |
11 |
agaatatcatcaattaagggagaagcatacatatcagagatatctgaaggaattgaacttgcacttgcttccaatttctgataacttgtggctcttaata |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
6587835 |
agaaaatcatcaattaagggagaagcatacatatcagagatctctgaaggaattgaaatagcacttgcttccaatttctgataacttgtggcttttagta |
6587934 |
T |
|
| Q |
111 |
catccaaaaatattgctgtatcttgagttagttgtagatctgaaccatactccacacaaagaattcgaagtttttgaaggtcattggaagtaccaagtga |
210 |
Q |
| |
|
|| ||| |||| || || |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
6587935 |
cacccagaaatcttactatatcttgagttagttgcagatctgaaccacactccacacaaagaattcgaagtttttgaaggtctttggaagtcccaagtga |
6588034 |
T |
|
| Q |
211 |
tgacatggacacagatgtttgaacaagggatatcacattattgaatggcgacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6588035 |
tgacatggacacagatgtttgaacaagggatatcacattatttgatggcgacatccaagaccgaatgagagaagggaatacatcacgtgaaaatccttca |
6588134 |
T |
|
| Q |
311 |
aagccactcagagaaatatatccaatg |
337 |
Q |
| |
|
||||||| | |||||||||||||||| |
|
|
| T |
6588135 |
aagccacaaaaagaaatatatccaatg |
6588161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 16 - 336
Target Start/End: Complemental strand, 6728843 - 6728523
Alignment:
| Q |
16 |
atcatcaattaagggagaagcatacatatcagagatatctgaaggaattgaacttgcacttgcttccaatttctgataacttgtggctcttaatacatcc |
115 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||| | | |||||||||||||| ||||||| |||| | || |||||||| ||||||| ||| |
|
|
| T |
6728843 |
atcatcaataaagggagaagcatacatatcagagatctctgatgtagttgaacttgcacttccttccaagttctcacaatttgtggcttttaatacctcc |
6728744 |
T |
|
| Q |
116 |
aaaaatattgctgtatcttgagttagttgtagatctgaaccatactccacacaaagaattcgaagtttttgaaggtcattggaagtaccaagtgatgaca |
215 |
Q |
| |
|
|||||| ||||| | |||| ||||||||||||||||| || | | ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6728743 |
aaaaatcttgctatttcttcagttagttgtagatctgtacgacattccacgcaaagaattcgaagtttttgaaggtccttggaagtaccaagtgatgaca |
6728644 |
T |
|
| Q |
216 |
tggacacagatgtttgaacaagggatatcacattattgaatggcgacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagcc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6728643 |
tggacacagatgtttgaacaagggatatcacattatttgatggcgacatccaagaccaaacaagagaagggaatacatcacgtgaaaatccttcaaagcc |
6728544 |
T |
|
| Q |
316 |
actcagagaaatatatccaat |
336 |
Q |
| |
|
|| | ||||||||||||||| |
|
|
| T |
6728543 |
acgaaaagaaatatatccaat |
6728523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 16 - 337
Target Start/End: Complemental strand, 6823128 - 6822807
Alignment:
| Q |
16 |
atcatcaattaagggagaagcatacatatcagagatatctgaaggaattgaacttgcacttgcttccaatttctgataacttgtggctcttaatacatcc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||| | | |||||||||||||||||||||| |||||| || |||||||| ||||||||||| |
|
|
| T |
6823128 |
atcatcaattaagggagaagcatacatatcaaagatctctgatgtagttgaacttgcacttgcttccaagttctgacaatttgtggcttttaatacatcc |
6823029 |
T |
|
| Q |
116 |
aaaaatattgctgtatcttgagttagttgtagatctgaaccatactccacacaaagaattcgaagtttttgaaggtcattggaagtaccaagtgatgaca |
215 |
Q |
| |
|
|||||| ||||| | | ||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
6823028 |
aaaaatcttgctatgtattgagtttgttgtagatctgaaccacactctacacaaagaattcgaagtttttgaaggtccttggaagagccaagtgatgaca |
6822929 |
T |
|
| Q |
216 |
tggacacagatgtttgaacaagggatatcacattattgaatggcgacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagcc |
315 |
Q |
| |
|
||||||||||||||||||| | |||||| | ||||| ||||||| |||||||| | ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6822928 |
tggacacagatgtttgaactaaggatattatgttatttgatggcgatatccaagagcgaatgagagaagggaatacatcacgtgaaaatccttcaaagcc |
6822829 |
T |
|
| Q |
316 |
actcagagaaatatatccaatg |
337 |
Q |
| |
|
| | |||||||||||||||| |
|
|
| T |
6822828 |
gcataaagaaatatatccaatg |
6822807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 35 - 338
Target Start/End: Complemental strand, 6837692 - 6837389
Alignment:
| Q |
35 |
gcatacatatcagagatatctgaaggaattgaacttgcacttgcttccaatttctgataacttgtggctcttaatacatccaaaaatattgctgtatctt |
134 |
Q |
| |
|
||||||| |||||| |||| ||| | | |||||||||||||||||||||| |||||| | |||||||| ||||||||||||||||| ||||| |||||| |
|
|
| T |
6837692 |
gcatacagatcagaaatatgtgatgtagttgaacttgcacttgcttccaagttctgacactttgtggcttttaatacatccaaaaatcttgctatatctt |
6837593 |
T |
|
| Q |
135 |
gagttagttgtagatctgaaccatactccacacaaagaattcgaagtttttgaaggtcattggaagtaccaagtgatgacatggacacagatgtttgaac |
234 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| | ||||||||||||||| ||| |||||||||| |
|
|
| T |
6837592 |
gagttagttgtagatctgaaccacactccacacaaagaattcgaagtttttgaatgtccttggaagaagcaagtgatgacatgggtacatatgtttgaac |
6837493 |
T |
|
| Q |
235 |
aagggatatcacattattgaatggcgacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagccactcagagaaatatatcca |
334 |
Q |
| |
|
||||||||||||||||| | |||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||| || | ||||||||||||| |
|
|
| T |
6837492 |
tagggatatcacattatttgaaggcgacatccaagagcgaatgagagaagggaatacatcacgtgaaaatccttcaaagccgcttaaagaaatatatcca |
6837393 |
T |
|
| Q |
335 |
atgt |
338 |
Q |
| |
|
|||| |
|
|
| T |
6837392 |
atgt |
6837389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 336
Target Start/End: Complemental strand, 6797224 - 6796904
Alignment:
| Q |
16 |
atcatcaattaagggagaagcatacatatcagagatatctgaaggaattgaacttgcacttgcttccaatttctgataacttgtggctcttaatacatcc |
115 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| | ||||| | |||||||||||||||||||| | ||| ||| ||||||||||||||||||||| |
|
|
| T |
6797224 |
atcatcaattaagggagaagcatacaaatcagaggtctctgatctagttgaacttgcacttgcttccgagttcggatcccttgtggctcttaatacatcc |
6797125 |
T |
|
| Q |
116 |
aaaaatattgctgtatcttgagttagttgtagatctgaaccatactccacacaaagaattcgaagtttttgaaggtcattggaagtaccaagtgatgaca |
215 |
Q |
| |
|
|||||| || | |||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
6797124 |
aaaaatctttcaatatcttgagttagttgtagatctgaatcacactccacaccaagaattcgaagtttttgaaggtccttagaagtaccaagtgatgaca |
6797025 |
T |
|
| Q |
216 |
tggacacagatgtttgaacaagggatatcacattattgaatggcgacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagcc |
315 |
Q |
| |
|
|||||| ||||||||||| |||||||| |||||||| |||||| |||||||||| |||||||||||||||||| || | |||||||||||||||||| |
|
|
| T |
6797024 |
tggacatagatgtttgaattagggatataacattatttgatggcgctatccaagaccgaatgagagaagggaatacgtcgcgtgaaaatccttcaaagcc |
6796925 |
T |
|
| Q |
316 |
actcagagaaatatatccaat |
336 |
Q |
| |
|
|| | ||||||||||||||| |
|
|
| T |
6796924 |
acaaaaagaaatatatccaat |
6796904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 63 - 337
Target Start/End: Complemental strand, 6753350 - 6753076
Alignment:
| Q |
63 |
ttgaacttgcacttgcttccaatttctgataacttgtggctcttaatacatccaaaaatattgctgtatcttgagttagttgtagatctgaaccatactc |
162 |
Q |
| |
|
||||||||||||||||||||| ||| |||| ||| ||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
6753350 |
ttgaacttgcacttgcttccatgttcggatactttgcagcttttaatacatccaaaaatcttgctatatcttgagttagttgtagatctgaaccacactc |
6753251 |
T |
|
| Q |
163 |
cacacaaagaattcgaagtttttgaaggtcattggaagtaccaagtgatgacatggacacagatgtttgaacaagggatatcacattattgaatggcgac |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| | |||||| | ||||| ||||||| |
|
|
| T |
6753250 |
cacacaaagaattcgaagtttttgaaggtccttggaagagccaagtgatgacatggacacagatgtttgaactaaggatattatgttatttgatggcgat |
6753151 |
T |
|
| Q |
263 |
atccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagccactcagagaaatatatccaatg |
337 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
6753150 |
atccaagaccgaatgagagaagggaatacatcacgtgaaaatccttcaaagccacgaaaagaaatatatccaatg |
6753076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 6815905 - 6815586
Alignment:
| Q |
18 |
catcaattaagggagaagcatacatatcagagatatctgaaggaattgaacttgcacttgcttccaatttctgataacttgtggctcttaatacatccaa |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||| | ||||||| |||||||||||||||| || | ||||| ||| | ||||||||||||| |
|
|
| T |
6815905 |
catcaattaagggagaatcatacatatcagagatctctgatgcaattgaatttgcacttgcttccaacatcgtacaacttatggtttttaatacatccaa |
6815806 |
T |
|
| Q |
118 |
aaatattgctgtatcttgagttagttgtagatctgaaccatactccacacaaagaattcgaagtttttgaaggtcattggaagtaccaagtgatgacatg |
217 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||| || || || |||||||||||| | |
|
|
| T |
6815805 |
aaatcttgcaatatcttgagttagttgtagatctgaaccacactccacataaagaactcgaagtttttgaaggtccttataattaacaagtgatgacacg |
6815706 |
T |
|
| Q |
218 |
gacacagatgtttgaacaagggatatcacattattgaatggcgacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagccac |
317 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||||| |||| ||||||||||| | || |||||||| |||||||||| || ||||||||||||||||| |
|
|
| T |
6815705 |
gacaccgatgtgtgaactagggatatcacattatttgatggtgacatccaagagcgaacgagagaagaaaatacatcacgtgtaaatccttcaaagccac |
6815606 |
T |
|
| Q |
318 |
tcagagaaatatatccaatg |
337 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
6815605 |
ctaaagaaatatatccaatg |
6815586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 71 - 337
Target Start/End: Original strand, 6545147 - 6545413
Alignment:
| Q |
71 |
gcacttgcttccaatttctgataacttgtggctcttaatacatccaaaaatattgctgtatcttgagttagttgtagatctgaaccatactccacacaaa |
170 |
Q |
| |
|
|||||| |||||||||| ||| || |||| ||| ||| |||||| |||| | ||||| ||||| |||||||||||| ||||| ||| |||||||||||| |
|
|
| T |
6545147 |
gcactttcttccaatttatgacaatttgtagcttttagtacatctaaaattcttgctacatctttagttagttgtagttctgagccacactccacacaaa |
6545246 |
T |
|
| Q |
171 |
gaattcgaagtttttgaaggtcattggaagtaccaagtgatgacatggacacagatgtttgaacaagggatatcacattattgaatggcgacatccaaga |
270 |
Q |
| |
|
|| ||||||| ||| |||||| ||| |||||||||| |||||||||||| ||||||||||||| | ||||||||||||||| |||| |||| |||||| |
|
|
| T |
6545247 |
gacttcgaagctttgtaaggtccttgaaagtaccaagagatgacatggactcagatgtttgaactaaggatatcacattatttgatggtgacagccaaga |
6545346 |
T |
|
| Q |
271 |
ccaaatgagagaagggaatacatcacctgaaaatccttcaaagccactcagagaaatatatccaatg |
337 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
6545347 |
ccgaatgagagaagggaatacatcacgtgaaaatccttcaaagccacgaaaagaaatatatccaatg |
6545413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 16 - 317
Target Start/End: Complemental strand, 6676140 - 6675839
Alignment:
| Q |
16 |
atcatcaattaagggagaagcatacatatcagagatatctgaaggaattgaacttgcacttgcttccaatttctgataacttgtggctcttaatacatcc |
115 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||| | ||| | | |||||||||||||||||||| ||| ||| || || ||||| ||||| ||||| |
|
|
| T |
6676140 |
atcatcaattaaaggagaatcatacatatcagagatttgtgatgtagttgaacttgcacttgcttcccattcatgacaatttttggcttttaatgcatcc |
6676041 |
T |
|
| Q |
116 |
aaaaatattgctgtatcttgagttagttgtagatctgaaccatactccacacaaagaattcgaagtttttgaaggtcattggaagtaccaagtgatgaca |
215 |
Q |
| |
|
|||| | ||| | |||||||| |||||||||| | ||| ||| |||||||||||||||||||||| ||| |||| || ||| |||||||||| ||||||| |
|
|
| T |
6676040 |
aaaattcttgttatatcttgatttagttgtagttgtgatccacactccacacaaagaattcgaagctttagaagatccttgaaagtaccaagagatgaca |
6675941 |
T |
|
| Q |
216 |
tggacacagatgtttgaacaagggatatcacattattgaatggcgacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagcc |
315 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||||| |||| |||||||||||| |||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
6675940 |
gggacatcgatgtctgaactcgggatatcacattatttgatggtgacatccaagacttaatgagagaaggaaatacatcaagtgaaaatccttcaaagcc |
6675841 |
T |
|
| Q |
316 |
ac |
317 |
Q |
| |
|
|| |
|
|
| T |
6675840 |
ac |
6675839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 17 - 337
Target Start/End: Original strand, 6498171 - 6498491
Alignment:
| Q |
17 |
tcatcaattaagggagaagcatacatatcagagatatctgaaggaattgaacttgcacttgcttccaatttctgataacttgtggctcttaatacatcca |
116 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||| | ||| | | ||| |||||||||||||||||||| ||| ||||| | ||| |||| |||||| |
|
|
| T |
6498171 |
tcatcaattaaaggagaagcatgcatatcagagatttgtgatgcagttgtacttgcacttgcttccaattcatgacaactttttgcttttaaagcatcca |
6498270 |
T |
|
| Q |
117 |
aaaatattgctgtatcttgagttagttgtagatctgaaccatactccacacaaagaattcgaagtttttgaaggtcattggaagtaccaagtgatgacat |
216 |
Q |
| |
|
|| | ||||| ||||||| | |||||||| | ||| ||| ||||||| |||||||||||||| ||| ||||||| ||| |||||||||| ||||||| |
|
|
| T |
6498271 |
caattcttgctacatcttgaataagttgtagttgtgatccacactccactcaaagaattcgaagctttagaaggtccttgaaagtaccaagagatgacag |
6498370 |
T |
|
| Q |
217 |
ggacacagatgtttgaacaagggatatcacattattgaatggcgacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagcca |
316 |
Q |
| |
|
|| | |||| ||| | |||||||||||||||| |||| ||||||||||||| |||||||||||| |||||||||| ||||||||||| ||| ||| |
|
|
| T |
6498371 |
gggtatcaatgtctgagctcgggatatcacattatttgatggtgacatccaagaccgaatgagagaaggaaatacatcacgtgaaaatcctttaaatcca |
6498470 |
T |
|
| Q |
317 |
ctcagagaaatatatccaatg |
337 |
Q |
| |
|
| | |||||| ||||||||| |
|
|
| T |
6498471 |
cctaaagaaatgtatccaatg |
6498491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 338
Target Start/End: Original strand, 6621157 - 6621473
Alignment:
| Q |
16 |
atcatcaattaagggagaagcatacatatcagagatatctgaaggaattgaacttgcacttgcttccaatttctgataacttgtggctcttaatacatcc |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| | ||| || | ||||||||||||||||| ||||| || || ||||| ||||||| ||| |
|
|
| T |
6621157 |
atcatcaattaaaggagaagcatacatatcagagatctgtga------tgtagttgcacttgcttccaatctctgacaatttttggcttttaatacttcc |
6621250 |
T |
|
| Q |
116 |
aaaaatattgctgtatcttgagttagttgtagatctgaaccatactccacacaaagaattcgaagtttttgaaggtcattggaagtaccaagtgatgaca |
215 |
Q |
| |
|
|||| | ||||| || |||| |||| ||||||||||| ||| | |||||||||||| ||||||| ||| ||||||| ||| |||||| ||| |||| || |
|
|
| T |
6621251 |
aaaactcttgctacattttgaattagctgtagatctgagccacattccacacaaagacttcgaagctttagaaggtccttgaaagtactaagagatggca |
6621350 |
T |
|
| Q |
216 |
tggacacagatgtttgaacaagggatatcacattattgaatggcgacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagcc |
315 |
Q |
| |
|
|||| ||||||||||||| || |||||| |||||| |||| ||||||||||| | ||| || ||||| || ||||| | ||||||||||||||| || |
|
|
| T |
6621351 |
tggatgcagatgtttgaactagtgatatctcattataagatggtgacatccaagagcgaataagtgaaggaaacacatcccgtgaaaatccttcaaatcc |
6621450 |
T |
|
| Q |
316 |
actcagagaaatatatccaatgt |
338 |
Q |
| |
|
|| | ||||||||||||||||| |
|
|
| T |
6621451 |
acataaagaaatatatccaatgt |
6621473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 34 - 338
Target Start/End: Complemental strand, 6651486 - 6651182
Alignment:
| Q |
34 |
agcatacatatcagagatatctgaaggaattgaacttgcacttgcttccaatttctgataacttgtggctcttaatacatccaaaaatattgctgtatct |
133 |
Q |
| |
|
|||||||||||||||| | ||||| | | ||| ||||| | ||||||| |||| ||| || |||||||| ||||| ||||||||| | | ||| |||| |
|
|
| T |
6651486 |
agcatacatatcagaggtttctgatgtagttgcacttggatttgcttcatatttatgacaaattgtggcttttaatgcatccaaaattctggctacatct |
6651387 |
T |
|
| Q |
134 |
tgagttagttgtagatctgaaccatactccacacaaagaattcgaagtttttgaaggtcattggaagtaccaagtgatgacatggacacagatgtttgaa |
233 |
Q |
| |
|
| |||||||||||| | ||| ||| |||| ||| ||| | ||||||| ||| |||||| ||| |||||||||| ||||| | ||| ||||||||||| |
|
|
| T |
6651386 |
tcagttagttgtagttttgagccacactctacaaaaatatttcgaagctttagaaggttcttgaaagtaccaagagatgattttgacgtagatgtttgaa |
6651287 |
T |
|
| Q |
234 |
caagggatatcacattattgaatggcgacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagccactcagagaaatatatcc |
333 |
Q |
| |
|
| |||||| | |||||| | |||| ||||||||||||| || |||| |||| |||||||| | |||||||||||||||||||| |||||||||||||| |
|
|
| T |
6651286 |
ctagggatgttacattagttgatggtgacatccaagaccgaacgagaaaaggaaatacatctcgtgaaaatccttcaaagccacatagagaaatatatcc |
6651187 |
T |
|
| Q |
334 |
aatgt |
338 |
Q |
| |
|
||||| |
|
|
| T |
6651186 |
aatgt |
6651182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 219 - 338
Target Start/End: Original strand, 6532079 - 6532198
Alignment:
| Q |
219 |
acacagatgtttgaacaagggatatcacattattgaatggcgacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagccact |
318 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| || |||| ||||||||||||| ||||| |||||| ||||||||| |||||||||||||||||| | |
|
|
| T |
6532079 |
acacagatgtttgaactagggacttcacattgtttgatggtgacatccaagaccgaatgatagaaggaaatacatcatttgaaaatccttcaaagccgca |
6532178 |
T |
|
| Q |
319 |
cagagaaatatatccaatgt |
338 |
Q |
| |
|
| |||||||||| |||||| |
|
|
| T |
6532179 |
aatagaaatatattcaatgt |
6532198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 33 - 337
Target Start/End: Complemental strand, 6759141 - 6758840
Alignment:
| Q |
33 |
aagcatacatatcagagatatctgaaggaattgaacttgcacttgcttccaatttctgataacttgtggctcttaatacatccaaaaatattgctgtatc |
132 |
Q |
| |
|
|||||| |||||||||||| | ||| | | |||||||||||||||||||||| ||| || | |||||| |||||||| ||| |||| || || | | |
|
|
| T |
6759141 |
aagcattcatatcagagatctgtgatgtagttgaacttgcacttgcttccaagttcggacattttgtggttcttaataaatcaaaaatcatggcaacaac |
6759042 |
T |
|
| Q |
133 |
ttgagttagttgtagatctgaaccatactccacacaaagaattcgaagtttttgaaggtcattggaagtaccaagtgatgacatggacacagatgtttga |
232 |
Q |
| |
|
|||||||| ||| | |||||| ||| ||||||| |||| | || |||| ||| ||||||| || | ||| |||| ||||||| ||||| ||||| |
|
|
| T |
6759041 |
ttgagttaattgaaaatctgagccacactccacgcaaaaactttgaagctttagaaggtct---gataaaacaatagatggcatggacgcagatctttga |
6758945 |
T |
|
| Q |
233 |
acaagggatatcacattattgaatggcgacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagccactcagagaaatatatc |
332 |
Q |
| |
|
|| || |||||||| ||||| ||| ||||||| ||||| ||||| | |||| |||| ||||| || ||||||||||||||||| |||||||||| ||| |
|
|
| T |
6758944 |
actagagatatcacgttatttgttggtgacatcctagaccgaatgacaaaaggaaatatatcacgtgcaaatccttcaaagccacacagagaaataaatc |
6758845 |
T |
|
| Q |
333 |
caatg |
337 |
Q |
| |
|
|||| |
|
|
| T |
6758844 |
taatg |
6758840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 223 - 317
Target Start/End: Complemental strand, 6761522 - 6761428
Alignment:
| Q |
223 |
agatgtttgaacaagggatatcacattattgaatggcgacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagccac |
317 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||||||||||| |||| |||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
6761522 |
agatgtttgaattagggatataacattatttgatggcgacatccatgaccgaatgagagaagggaatacatcatgtgaaaatcctttgaagccac |
6761428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 260 - 337
Target Start/End: Original strand, 4320507 - 4320584
Alignment:
| Q |
260 |
gacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagccactcagagaaatatatccaatg |
337 |
Q |
| |
|
||||||||||||||||||| |||||| || ||||||| ||| ||||||||| | |||| |||||||||| |||||||| |
|
|
| T |
4320507 |
gacatccaagaccaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatg |
4320584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 337
Target Start/End: Complemental strand, 4344839 - 4344762
Alignment:
| Q |
260 |
gacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagccactcagagaaatatatccaatg |
337 |
Q |
| |
|
||||||||||||||||||| |||||| || ||||||| ||| ||||||||| | |||| || ||||||| |||||||| |
|
|
| T |
4344839 |
gacatccaagaccaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacaaagaaataaatccaatg |
4344762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 337
Target Start/End: Complemental strand, 4361270 - 4361193
Alignment:
| Q |
260 |
gacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagccactcagagaaatatatccaatg |
337 |
Q |
| |
|
|||||||||||| |||||| |||||| || ||||||| ||| ||||||||| | |||| || ||||||| |||||||| |
|
|
| T |
4361270 |
gacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacaaagaaataaatccaatg |
4361193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 337
Target Start/End: Original strand, 4123828 - 4123904
Alignment:
| Q |
261 |
acatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagccactcagagaaatatatccaatg |
337 |
Q |
| |
|
||||||||||| |||||| |||||| || ||||||| || ||||||||| | |||| |||||||||| |||||||| |
|
|
| T |
4123828 |
acatccaagacgaaatgatagaaggaaacacatcacgagagaatccttcatatccacacagagaaataaatccaatg |
4123904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 35 - 338
Target Start/End: Complemental strand, 10108 - 9805
Alignment:
| Q |
35 |
gcatacatatcagagatatctgaaggaattgaacttgcacttgcttccaatttctgataacttgtggctcttaatacatccaaaaatattgctgtatctt |
134 |
Q |
| |
|
||||||| |||||| |||| ||| | | |||||||||||||||||||||| |||||| | |||||||| ||||||||||||||||| ||||| |||||| |
|
|
| T |
10108 |
gcatacagatcagaaatatgtgatgtagttgaacttgcacttgcttccaagttctgacactttgtggcttttaatacatccaaaaatcttgctatatctt |
10009 |
T |
|
| Q |
135 |
gagttagttgtagatctgaaccatactccacacaaagaattcgaagtttttgaaggtcattggaagtaccaagtgatgacatggacacagatgtttgaac |
234 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| | ||||||||||||||| ||| |||||||||| |
|
|
| T |
10008 |
gagttagttgtagatctgaaccacactccacacaaagaattcgaagtttttgaatgtccttggaagaagcaagtgatgacatgggtacatatgtttgaac |
9909 |
T |
|
| Q |
235 |
aagggatatcacattattgaatggcgacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagccactcagagaaatatatcca |
334 |
Q |
| |
|
||||||||||||||||| | |||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||| || | ||||||||||||| |
|
|
| T |
9908 |
tagggatatcacattatttgaaggcgacatccaagagcgaatgagagaagggaatacatcacgtgaaaatccttcaaagccgcttaaagaaatatatcca |
9809 |
T |
|
| Q |
335 |
atgt |
338 |
Q |
| |
|
|||| |
|
|
| T |
9808 |
atgt |
9805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0552 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: scaffold0552
Description:
Target: scaffold0552; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 7928 - 8250
Alignment:
| Q |
18 |
catcaattaagggagaagcatacatatcagagatatctgaaggaattgaacttgcacttgcttccaatttctgataacttgtggctcttaatacatccaa |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||| | ||||||| |||||||||||||||| || | ||||| ||| | ||||||||||||| |
|
|
| T |
7928 |
catcaattaagggagaatcatacatatcagagatctctgatgcaattgaatttgcacttgcttccaacatcgtacaacttatggtttttaatacatccaa |
8027 |
T |
|
| Q |
118 |
aaatattgctgtatcttgagttagttgtagatctgaaccatactccacacaaagaattcgaa-gtttttgaaggtcatt--ggaagtaccaagtgatgac |
214 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||| |||||||| |||||| ||||| ||||||||||||| || | || ||||||||||| |
|
|
| T |
8028 |
aaatcttgcaatatcttgagttagttgtagatctgaaccacactccacataaagaactcgaaggtttttgaaggtcctttataatttaacaagtgatgac |
8127 |
T |
|
| Q |
215 |
atggacacagatgtttgaacaagggatatcacattattgaatggcgacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagc |
314 |
Q |
| |
|
| |||||| ||||| ||||| ||||||||||||||||| |||| ||||||||||| | || |||||||| |||||| ||| || |||||||||||||| |
|
|
| T |
8128 |
acggacaccgatgtgtgaactagggatatcacattatttgatggtgacatccaagagcgaacgagagaagaaaatacagcacgtgtaaatccttcaaagc |
8227 |
T |
|
| Q |
315 |
cactcagagaaatatatccaatg |
337 |
Q |
| |
|
||| | |||||||||||||||| |
|
|
| T |
8228 |
cacctaaagaaatatatccaatg |
8250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 7096 - 6774
Alignment:
| Q |
16 |
atcatcaattaagggagaagcatacatatcagagatatctgaaggaattgaacttgcacttgcttccaatttctgataacttgtggctcttaatacatcc |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| | ||| | | ||| ||||| | ||||||| |||| ||| || |||||||| ||||||| ||| |
|
|
| T |
7096 |
atcatcaattaaaggagaagcatacatatcagagatctgtgatgtagttgcacttggatttgcttcatatttatgacaaattgtggcttttaatacttcc |
6997 |
T |
|
| Q |
116 |
aaaaatattgctgtatcttgagttagttgtagatctgaaccatactccacacaaagaattcgaagtttttgaaggtcattggaagtaccaagtgatgaca |
215 |
Q |
| |
|
|||| | ||||| || |||| |||| ||||||||||| ||| | |||||||||||| ||||||| ||| |||||| ||| |||||| ||| |||| || |
|
|
| T |
6996 |
aaaactcttgctacattttgaattagctgtagatctgagccacattccacacaaagacttcgaagctttagaaggttcttgaaagtactaagagatggca |
6897 |
T |
|
| Q |
216 |
tggacacagatgtttgaacaagggatatcacattattgaatggcgacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagcc |
315 |
Q |
| |
|
|||| ||||||||||||| || |||||| |||||| |||| ||||||||||| | ||| || ||||| || ||||| | ||||||||||||||| || |
|
|
| T |
6896 |
tggatgcagatgtttgaactagtgatatctcattataagatggtgacatccaagagcgaataagtgaaggaaacacatcccgtgaaaatccttcaaatcc |
6797 |
T |
|
| Q |
316 |
actcagagaaatatatccaatgt |
338 |
Q |
| |
|
|| | ||||||||||||||||| |
|
|
| T |
6796 |
acataaagaaatatatccaatgt |
6774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0813 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0813
Description:
Target: scaffold0813; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 34 - 338
Target Start/End: Original strand, 4488 - 4792
Alignment:
| Q |
34 |
agcatacatatcagagatatctgaaggaattgaacttgcacttgcttccaatttctgataacttgtggctcttaatacatccaaaaatattgctgtatct |
133 |
Q |
| |
|
|||||||||||||||| | ||||| | | ||| ||||| | ||||||| |||| ||| || |||||||| ||||| ||||||||| | | ||| |||| |
|
|
| T |
4488 |
agcatacatatcagaggtttctgatgtagttgcacttggatttgcttcatatttatgacaaattgtggcttttaatgcatccaaaattctggctacatct |
4587 |
T |
|
| Q |
134 |
tgagttagttgtagatctgaaccatactccacacaaagaattcgaagtttttgaaggtcattggaagtaccaagtgatgacatggacacagatgtttgaa |
233 |
Q |
| |
|
| |||||||||||| | ||| ||| |||| ||| ||| | ||||||| ||| |||||| ||| |||||||||| ||||| | ||| ||||||||||| |
|
|
| T |
4588 |
tcagttagttgtagttttgagccacactctacaaaaatatttcgaagctttagaaggttcttgaaagtaccaagagatgattttgacgtagatgtttgaa |
4687 |
T |
|
| Q |
234 |
caagggatatcacattattgaatggcgacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagccactcagagaaatatatcc |
333 |
Q |
| |
|
| |||||| | |||||| | |||| ||||||||||||| || |||| |||| |||||||| | |||||||||||||||||||| |||||||||||||| |
|
|
| T |
4688 |
ctagggatgttacattagttgatggtgacatccaagaccgaacgagaaaaggaaatacatctcgtgaaaatccttcaaagccacatagagaaatatatcc |
4787 |
T |
|
| Q |
334 |
aatgt |
338 |
Q |
| |
|
||||| |
|
|
| T |
4788 |
aatgt |
4792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 260 - 337
Target Start/End: Complemental strand, 5345054 - 5344977
Alignment:
| Q |
260 |
gacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagccactcagagaaatatatccaatg |
337 |
Q |
| |
|
|||||||||||||| |||| ||| || |||||||| | ||| ||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
5345054 |
gacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatg |
5344977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 337
Target Start/End: Original strand, 5073796 - 5073873
Alignment:
| Q |
260 |
gacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagccactcagagaaatatatccaatg |
337 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||||| ||| ||||||||| |||| | || |||||||||||||||| |
|
|
| T |
5073796 |
gacatccaagaccaaatgatcgatgggaacacatcacgtgagaatccttcatagccgcacaaagaaatatatccaatg |
5073873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 5243801 - 5243874
Alignment:
| Q |
260 |
gacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagccactcagagaaatatatcc |
333 |
Q |
| |
|
|||||||||||||| |||| ||| || |||||||| | ||||||||||||| |||||| || |||||||||||| |
|
|
| T |
5243801 |
gacatccaagaccagatgatagatggaaatacatcgcgtgaaaatccttcatagccacacaaagaaatatatcc |
5243874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 337
Target Start/End: Original strand, 5354502 - 5354579
Alignment:
| Q |
260 |
gacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagccactcagagaaatatatccaatg |
337 |
Q |
| |
|
||||||||||||||||||| ||| || || ||||||| ||| ||||||||| |||||| | |||||||||||||||| |
|
|
| T |
5354502 |
gacatccaagaccaaatgatagatggaaacacatcacgtgagaatccttcatagccacataaagaaatatatccaatg |
5354579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 337
Target Start/End: Original strand, 5128305 - 5128382
Alignment:
| Q |
260 |
gacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagccactcagagaaatatatccaatg |
337 |
Q |
| |
|
|||||||||||||| |||| ||| || || ||||||| ||||||||||||| ||| | |||||| |||||||||||| |
|
|
| T |
5128305 |
gacatccaagaccagatgatagatggaaacacatcacttgaaaatccttcatggccgcacagagagatatatccaatg |
5128382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 337
Target Start/End: Complemental strand, 5096938 - 5096824
Alignment:
| Q |
223 |
agatgtttgaacaagggatatcacattattgaatggcgacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagccactcaga |
322 |
Q |
| |
|
|||||||||||| |||||| | |||||| ||| |||| ||||||||| |||| ||| || || ||||||| ||||||||||||| ||||| ||| |
|
|
| T |
5096938 |
agatgtttgaactagggatgagagattatttgttggtgacaaccaagaccagatgatagacggaaacacatcacgtgaaaatccttcatggccacataga |
5096839 |
T |
|
| Q |
323 |
gaaatatatccaatg |
337 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
5096838 |
gaaatgtatccaatg |
5096824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 337
Target Start/End: Original strand, 5102502 - 5102579
Alignment:
| Q |
260 |
gacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagccactcagagaaatatatccaatg |
337 |
Q |
| |
|
|||||||||||||| |||| ||| || || |||||| ||||| ||||||| |||||| ||||| |||||||||||| |
|
|
| T |
5102502 |
gacatccaagaccagatgatagatggaaacacatcatgtgaaagtccttcatagccacatagagagatatatccaatg |
5102579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 337
Target Start/End: Original strand, 5157516 - 5157593
Alignment:
| Q |
260 |
gacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagccactcagagaaatatatccaatg |
337 |
Q |
| |
|
||||||||||||||||||| ||| || || ||||||| |||||||||||| |||| | || ||| || ||||||||| |
|
|
| T |
5157516 |
gacatccaagaccaaatgatagatggaaacacatcacgagaaaatccttcatagccgcccaaagagatgtatccaatg |
5157593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 337
Target Start/End: Original strand, 5690047 - 5690124
Alignment:
| Q |
260 |
gacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagccactcagagaaatatatccaatg |
337 |
Q |
| |
|
||||||||||||||||||| ||| || |||| ||||| ||| ||||||||| || | |||||||||||| |||||| |
|
|
| T |
5690047 |
gacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatgtccgcacagagaaatatacccaatg |
5690124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 337
Target Start/End: Complemental strand, 8877802 - 8877725
Alignment:
| Q |
260 |
gacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagccactcagagaaatatatccaatg |
337 |
Q |
| |
|
||||||||||||||||||| ||| || || ||||||| |||||||||||| |||| | || |||||||||||||||| |
|
|
| T |
8877802 |
gacatccaagaccaaatgatagatggaaacacatcacgcgaaaatccttcatagccgcacaaagaaatatatccaatg |
8877725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 337
Target Start/End: Original strand, 12599060 - 12599137
Alignment:
| Q |
260 |
gacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagccactcagagaaatatatccaatg |
337 |
Q |
| |
|
||||||||||||||| |||||||||| || ||||||| ||| ||||||||| | |||| || || |||||||||||| |
|
|
| T |
12599060 |
gacatccaagaccaattgagagaaggaaaaacatcacgtgataatccttcatatccacacaaggatatatatccaatg |
12599137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 20812470 - 20812421
Alignment:
| Q |
260 |
gacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttc |
309 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||| ||| |||||||| |
|
|
| T |
20812470 |
gacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttc |
20812421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 337
Target Start/End: Complemental strand, 20838825 - 20838748
Alignment:
| Q |
260 |
gacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagccactcagagaaatatatccaatg |
337 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||| ||| ||||||||| | |||| || || |||||||||||| |
|
|
| T |
20838825 |
gacatccaagaccaaatgagagaaggaaaaacatcatgtgataatccttcatatccacatagtgatatatatccaatg |
20838748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 337
Target Start/End: Complemental strand, 31176040 - 31175963
Alignment:
| Q |
260 |
gacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagccactcagagaaatatatccaatg |
337 |
Q |
| |
|
|||||||||||||||||||||||||| || || |||| ||| ||||||||| | |||| ||||| |||||| ||||| |
|
|
| T |
31176040 |
gacatccaagaccaaatgagagaaggaaaaacgtcacatgataatccttcatatccacatagagatatatatgcaatg |
31175963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 337
Target Start/End: Original strand, 3391544 - 3391621
Alignment:
| Q |
260 |
gacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagccactcagagaaatatatccaatg |
337 |
Q |
| |
|
||||||||||||| |||||||||||| || |||| | ||| ||||||||| | |||| ||||| |||||||||||| |
|
|
| T |
3391544 |
gacatccaagacctaatgagagaaggaaaaacatgatgtgataatccttcatatccacatagagatatatatccaatg |
3391621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 3407331 - 3407379
Alignment:
| Q |
260 |
gacatccaagaccaaatgagagaagggaatacatcacctgaaaatcctt |
308 |
Q |
| |
|
||||||||||||||||||| |||||| || ||||||| ||| ||||||| |
|
|
| T |
3407331 |
gacatccaagaccaaatgatagaaggaaaaacatcacgtgataatcctt |
3407379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 315
Target Start/End: Original strand, 47986760 - 47986815
Alignment:
| Q |
260 |
gacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagcc |
315 |
Q |
| |
|
||||||||||||||||||| ||| || || ||||||| ||||||||||||| |||| |
|
|
| T |
47986760 |
gacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcatagcc |
47986815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 315
Target Start/End: Original strand, 47996047 - 47996102
Alignment:
| Q |
260 |
gacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagcc |
315 |
Q |
| |
|
||||||||||||||||||| ||| || || ||||||| ||||||||||||| |||| |
|
|
| T |
47996047 |
gacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcatagcc |
47996102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 315
Target Start/End: Original strand, 48005334 - 48005389
Alignment:
| Q |
260 |
gacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagcc |
315 |
Q |
| |
|
||||||||||||||||||| ||| || || ||||||| ||||||||||||| |||| |
|
|
| T |
48005334 |
gacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcatagcc |
48005389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 315
Target Start/End: Original strand, 48014619 - 48014674
Alignment:
| Q |
260 |
gacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttcaaagcc |
315 |
Q |
| |
|
||||||||||||||||||| ||| || || ||||||| ||||||||||||| |||| |
|
|
| T |
48014619 |
gacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcatagcc |
48014674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 310
Target Start/End: Original strand, 6905814 - 6905864
Alignment:
| Q |
260 |
gacatccaagaccaaatgagagaagggaatacatcacctgaaaatccttca |
310 |
Q |
| |
|
|||||||||||||||||||||||||| || | ||||| ||| ||||||||| |
|
|
| T |
6905814 |
gacatccaagaccaaatgagagaaggaaaaatatcacgtgataatccttca |
6905864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University