View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19934_high_29 (Length: 312)

Name: NF19934_high_29
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19934_high_29
NF19934_high_29
[»] chr4 (2 HSPs)
chr4 (1-176)||(37811563-37811738)
chr4 (175-304)||(37811761-37811890)
[»] chr1 (2 HSPs)
chr1 (45-143)||(52356185-52356283)
chr1 (175-299)||(52357166-52357287)
[»] chr5 (3 HSPs)
chr5 (1-143)||(17209043-17209179)
chr5 (175-304)||(17209436-17209565)
chr5 (1-83)||(17200105-17200181)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 37811563 - 37811738
Alignment:
Q  1 tgggcgtcaagacgaagaacaggagctttggttctcttattcaactgaggaattttcttcagcttctctgataacaatttctgaatttgtaaagccttct 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37811563 tgggcgtcaagacgaagaaaaggagctttggttctcttattcaactgaggaattttcttcagcttctctgacaacaatttctgaatttgtaaagccttct 37811662  T
Q  101 tagcctttgctaaggcatcactactagagaggcttccaagtttatcaccaaatctcctacgttccttctttgcttc 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37811663 tagcctttgctaaggcatcactactagagaggcttccaagtttatcaccaaatctcctacgttccttctttgcttc 37811738  T

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Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 175 - 304
Target Start/End: Original strand, 37811761 - 37811890
Alignment:
Q  175 tccaattccctatcctcgctatgttctctatctttcctcttatgcaaggagtatcgagtttccactgaatactccatctcttcatcgcgtttcgatttag 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37811761 tccaattccctatcctcgctatgttctctatctttcctcttatgcaaggagtatcgagtttccactgaatactccatctcttcatcgcgcttcgatttag 37811860  T
Q  275 acctacctttgctaccctctctttcatctc 304  Q
    ||||||||| ||||||||||||||| ||||    
T  37811861 acctaccttagctaccctctctttcgtctc 37811890  T

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Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 45 - 143
Target Start/End: Original strand, 52356185 - 52356283
Alignment:
Q  45 ctgaggaattttcttcagcttctctgataacaatttctgaatttgtaaagccttcttagcctttgctaaggcatcactactagagaggcttccaagttt 143  Q
    |||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52356185 ctgaggaattttcttcagcttcgctgacaacaatttctgcatttgtaaagccttcttagcctttgctaaggcatcactactagagaggcttccaagttt 52356283  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 175 - 299
Target Start/End: Original strand, 52357166 - 52357287
Alignment:
Q  175 tccaattccctatcctcgctatgttctctatctttcctcttatgcaaggagtatcgagtttccactgaatactccatctcttcatcgcgtttcgatttag 274  Q
    |||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||    |||| |||||  ||| ||||||||||||| ||||||||||    
T  52357166 tccaattcccgatcctcgctatgttctctgtctttcctcttatgcgaggagtatcgc---tccaatgaatcttccctctcttcatcgcgcttcgatttag 52357262  T
Q  275 acctacctttgctaccctctctttc 299  Q
    |||||||||||||||||||||||||    
T  52357263 acctacctttgctaccctctctttc 52357287  T

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Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 17209043 - 17209179
Alignment:
Q  1 tgggcgtcaagacgaagaacaggagctttggttctcttattcaactgaggaattttcttcagcttctctgataacaatttctgaatttgtaaagccttct 100  Q
    ||||||||||||||||||| |||||| ||||||   ||      |||||||||||||||| |||||| |||||| |||||||| ||||||||||||||||    
T  17209043 tgggcgtcaagacgaagaaaaggagccttggttggttt------ctgaggaattttcttcggcttctatgataataatttctgcatttgtaaagccttct 17209136  T
Q  101 tagcctttgctaaggcatcactactagagaggcttccaagttt 143  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  17209137 tagcctttgctaaggcatcactactagagaagcttccaagttt 17209179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 175 - 304
Target Start/End: Original strand, 17209436 - 17209565
Alignment:
Q  175 tccaattccctatcctcgctatgttctctatctttcctcttatgcaaggagtatcgagtttccactgaatactccatctcttcatcgcgtttcgatttag 274  Q
    ||||||||||  ||||||||||||||||||||||||||||||||| |||||||| | | || |||||||| |||||||||||| | | | |||||| ||     
T  17209436 tccaattcccggtcctcgctatgttctctatctttcctcttatgcgaggagtattgcggtttcactgaatcctccatctcttcgtagtgcttcgatatat 17209535  T
Q  275 acctacctttgctaccctctctttcatctc 304  Q
    ||||||||||| ||||||||||||| ||||    
T  17209536 acctacctttgttaccctctctttcgtctc 17209565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 17200105 - 17200181
Alignment:
Q  1 tgggcgtcaagacgaagaacaggagctttggttctcttattcaactgaggaattttcttcagcttctctgataacaatttctg 83  Q
    |||||||||||||||||||||||||| ||||||   ||      ||||||||||||||||||||||||||| || ||||||||    
T  17200105 tgggcgtcaagacgaagaacaggagccttggttggttt------ctgaggaattttcttcagcttctctgacaataatttctg 17200181  T

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