View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19934_high_32 (Length: 301)
Name: NF19934_high_32
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19934_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 288
Target Start/End: Original strand, 44108746 - 44109021
Alignment:
| Q |
13 |
aaaattgatagctacaagcacgaaagtatatggaactcttgtttcccaaataagaacaaaggctgataaacaatacaccattattgatttgtgacactct |
112 |
Q |
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| T |
44108746 |
aaaattgatagctacaagcacgaaagtatatggaactcttgtttcccaaataagaacaaaggctgataaacaatacaccattattgatttgtgacactct |
44108845 |
T |
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| Q |
113 |
ttgttcgtcacaacgaaaaaattgaacttcgatggatgatgaaatgggaaaggtagagtgcaggagatcgtgtgtaatactcaaacaatatctcttacac |
212 |
Q |
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| T |
44108846 |
ttgttcgccacaacgaaaaaattgaacttcgatggatgatgaaatgggaaaggtagagtgcaggagatcatgtgtaatactcaaacaatatctcttacac |
44108945 |
T |
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| Q |
213 |
acttacaaattgcaacatttttatccttgtacaaaattaagaaactcttcattctgacaaaatgaatgtagaaact |
288 |
Q |
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| T |
44108946 |
acttacaaattgcaacatttttatccttgtacaaaattaagaaactcttcattctgacaaaatgaatgtagaaact |
44109021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 266
Target Start/End: Original strand, 44145821 - 44145900
Alignment:
| Q |
190 |
tactcaaacaatatctcttacacacttac---aaattgcaacatttttatccttgtacaaaattaagaaactcttcattc |
266 |
Q |
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| T |
44145821 |
tactcaaacaatatttcttacacactttagtgaaattgcaacatttttatccttgtacaaaatgaagaaactcttcattc |
44145900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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