View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19934_high_36 (Length: 272)
Name: NF19934_high_36
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19934_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 13301911 - 13302167
Alignment:
| Q |
1 |
ttaggcacaagagatgtttgcttaccatcccataatgatgttgcacttgaggcagctagacagggtattgtccttctacaaaacaaaggaaatgcattgc |
100 |
Q |
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| T |
13301911 |
ttaggcacaagagatgtttgcttaccatcccataatgatgttgcacttgaggcagctagacagggtattgtccttctacaaaacaaaggaaatgcattgc |
13302010 |
T |
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| Q |
101 |
cattatcccctacaagataccgcactgtaggagtcattggtcccaattctgatgttactgttaccatgataggaaactatgctggttagttacttctcat |
200 |
Q |
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| T |
13302011 |
cattatcccctacaagataccgcactgtaggagtcattggtcccaattctgatgttactgttaccatgataggaaactatgctggttagttacttctcac |
13302110 |
T |
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| Q |
201 |
ttaagtaaccac-ttttttataaacttacataaagtgaatctatgtagtaaaataat |
256 |
Q |
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| T |
13302111 |
ttaagtaaccactttttttataaacttacataaagtgaatctatgtagtaaaataat |
13302167 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 44715592 - 44715543
Alignment:
| Q |
133 |
gtcattggtcccaattctgatgttactgttaccatgataggaaactatgc |
182 |
Q |
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| T |
44715592 |
gtcattgggcccaattccgatgtcacagttaccatgattggaaactatgc |
44715543 |
T |
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