View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19934_high_5 (Length: 484)
Name: NF19934_high_5
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19934_high_5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 484
Target Start/End: Original strand, 14051931 - 14052397
Alignment:
| Q |
18 |
gctatggggtacctggcaccagaatacacaacaaccggtcgtttcaccgaaaagagtgacgtgtacgctttcggggtgatcgttttccagattctcactg |
117 |
Q |
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| T |
14051931 |
gctatggggtacctggcaccagaatacacaacaaccggtcgtttcaccgaaaagagtgatgtgtacgctttcgggatgattgttttccagattctcactg |
14052030 |
T |
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| Q |
118 |
gaaaacacaatatcactcaattaagtcgtcaatgtgtagaaaccggtagtttgaaagatattattgatgagaatcttgaagggaagttcttagaatcaga |
217 |
Q |
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| T |
14052031 |
gaaaacacgatatcactcaattaagtcgtcaatgtgtagaaactggtactttgaaagatattattgatgagaatcttgaagggaagttcttagaatcaga |
14052130 |
T |
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| Q |
218 |
ggcagagaaattggcgagactcgctttggtttgcaccgatgaatctcctcatctccggccgactatggagaatgtaatgcttgaactgagtcataaatgg |
317 |
Q |
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| T |
14052131 |
ggcagagaaattggcgagactcgctttggtttgcaccgatgaatctcctcatctccggccgactatggagaatgtaatgcttgaactgagtcataaatgg |
14052230 |
T |
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| Q |
318 |
taagcacttcatgacaagaagagtgatattttagtttgcctttggttataaaatagtatgttttcctagagtcaattatgtttcaaattgttttgtatta |
417 |
Q |
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| T |
14052231 |
taagcacttcatgacaagaagaatgatattttagtttgcctttggttataaaatagtatgttttcctagagtcaattatgtttcaaattgttttgtatta |
14052330 |
T |
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| Q |
418 |
atattaatatagttgagaacatgtagtgttgagggaaatctagtatgtacagaaggaaggtttcatt |
484 |
Q |
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| T |
14052331 |
atattaatatagttgagaacatgtagtgttgagggaaatctagtatgtacagaaggatggtttcatt |
14052397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 484
Target Start/End: Original strand, 14361959 - 14362425
Alignment:
| Q |
18 |
gctatggggtacctggcaccagaatacacaacaaccggtcgtttcaccgaaaagagtgacgtgtacgctttcggggtgatcgttttccagattctcactg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||| |
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| T |
14361959 |
gctatggggtacctggcaccagaatacacaacaaccggtcgtttcaccgaaaagagtgatgtgtacgctttcgggatgattgttttccagattctcactg |
14362058 |
T |
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| Q |
118 |
gaaaacacaatatcactcaattaagtcgtcaatgtgtagaaaccggtagtttgaaagatattattgatgagaatcttgaagggaagttcttagaatcaga |
217 |
Q |
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| T |
14362059 |
gaaaacacgatatcactcaattaagtcgtcaatgtgtagaaactggtactttgaaagatattattgatgagaatcttgaagggaagttcttagaatcaga |
14362158 |
T |
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| Q |
218 |
ggcagagaaattggcgagactcgctttggtttgcaccgatgaatctcctcatctccggccgactatggagaatgtaatgcttgaactgagtcataaatgg |
317 |
Q |
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| T |
14362159 |
ggcagagaaattggcgagactcgctttggtttgcaccgatgaatctcctcatctccggccgactatggagaatgtaatgcttgaactgagtcataaatgg |
14362258 |
T |
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| Q |
318 |
taagcacttcatgacaagaagagtgatattttagtttgcctttggttataaaatagtatgttttcctagagtcaattatgtttcaaattgttttgtatta |
417 |
Q |
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| T |
14362259 |
taagcacttcatgacaagaagaatgatattttagtttgcctttggttataaaatagtatgttttcctagagtcaattatgtttcaaattgttttgtatta |
14362358 |
T |
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| Q |
418 |
atattaatatagttgagaacatgtagtgttgagggaaatctagtatgtacagaaggaaggtttcatt |
484 |
Q |
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| T |
14362359 |
atattaatatagttgagaacatgtagtgttgagggaaatctagtatgtacagaaggatggtttcatt |
14362425 |
T |
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