View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19934_high_50 (Length: 221)
Name: NF19934_high_50
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19934_high_50 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 28653761 - 28653955
Alignment:
| Q |
1 |
ccaaatgtgcaaccccaaaatatttctatatatagcttctaatgtccctctcctacataacataactcacaataagagtgacatttcaacttgctagata |
100 |
Q |
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| T |
28653761 |
ccaaatgtgcaactccaaaatatttctatatatagcttataatgtccctctcctacataacataactcacaataagagagacatttcaacttgctaaata |
28653860 |
T |
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| Q |
101 |
tggataacaagcctcgttctaattcctatttcctctttctattgcttatcctacattttaacttgggtatattttagaatctacgtattgactct |
195 |
Q |
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| T |
28653861 |
tggctaacaagcctcgttctaattcgtctttcctctttctattgcttatcctacattttaacatgggtacattttagaatctacctattgactct |
28653955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 80 - 174
Target Start/End: Original strand, 28604017 - 28604111
Alignment:
| Q |
80 |
gacatttcaacttgctagatatggataacaagcctcgttctaattcctatttcctctttctattgcttatcctacattttaacttgggtatattt |
174 |
Q |
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| T |
28604017 |
gacatttcaacttgctagatatggcttacaagtctagttctaattcctctttcctctttctattgcttctcctacattttaatttgggtacattt |
28604111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 80 - 200
Target Start/End: Original strand, 28634941 - 28635061
Alignment:
| Q |
80 |
gacatttcaacttgctagatatggataacaagcctcgttctaattcctatttcctctttctattgcttatcctacattttaacttgggtatattttagaa |
179 |
Q |
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| T |
28634941 |
gacatttcaacttgctagacatggccatcaagccttcttctaattcctcttttctctttctattgcttctcctacatttttatttgggtacattttcgct |
28635040 |
T |
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| Q |
180 |
tctacgtattgactctgtttc |
200 |
Q |
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| T |
28635041 |
tctacttattgactctctttc |
28635061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 169
Target Start/End: Original strand, 28662531 - 28662620
Alignment:
| Q |
80 |
gacatttcaacttgctagatatggataacaagcctcgttctaattcctatttcctctttctattgcttatcctacattttaacttgggta |
169 |
Q |
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||||||| ||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||| | ||||||||| | ||||||| |
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| T |
28662531 |
gacatttaaacttgcaagatatggcatccaagcctcgttctaatttctgtttcctctttctattgcttcttctacatttttatttgggta |
28662620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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