View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19934_high_51 (Length: 213)

Name: NF19934_high_51
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19934_high_51
NF19934_high_51
[»] chr7 (7 HSPs)
chr7 (1-198)||(8342537-8342735)
chr7 (5-198)||(8328920-8329113)
chr7 (81-198)||(8341924-8342040)
chr7 (87-198)||(8328293-8328404)
chr7 (87-140)||(18471691-18471744)
chr7 (87-136)||(18470237-18470286)
chr7 (9-70)||(18471773-18471835)
[»] chr2 (6 HSPs)
chr2 (5-198)||(4734079-4734285)
chr2 (5-198)||(4733307-4733513)
chr2 (5-80)||(14160413-14160489)
chr2 (5-53)||(4410660-4410708)
chr2 (5-80)||(14159209-14159285)
chr2 (5-53)||(38695173-38695221)
[»] chr1 (6 HSPs)
chr1 (80-198)||(9115924-9116042)
chr1 (5-190)||(9114822-9115021)
chr1 (5-198)||(14904459-14904664)
chr1 (5-80)||(14903809-14903885)
chr1 (83-140)||(14903900-14903957)
chr1 (25-80)||(9116054-9116110)
[»] chr5 (6 HSPs)
chr5 (5-191)||(9379933-9380134)
chr5 (87-184)||(9380594-9380691)
chr5 (5-52)||(23322384-23322431)
chr5 (5-50)||(9380741-9380786)
chr5 (5-53)||(34634071-34634119)
chr5 (5-53)||(43183233-43183281)
[»] chr4 (17 HSPs)
chr4 (5-198)||(28451403-28451609)
chr4 (5-78)||(9449718-9449792)
chr4 (5-67)||(45667234-45667297)
chr4 (5-70)||(12585425-12585491)
chr4 (87-140)||(28450848-28450901)
chr4 (5-80)||(4437683-4437759)
chr4 (5-80)||(4439030-4439106)
chr4 (5-80)||(9450915-9450991)
chr4 (5-53)||(17931291-17931339)
chr4 (5-53)||(17932160-17932208)
chr4 (5-67)||(10468750-10468813)
chr4 (5-67)||(25225793-25225856)
chr4 (5-53)||(9268026-9268074)
chr4 (5-45)||(10286413-10286453)
chr4 (5-53)||(12315858-12315906)
chr4 (5-53)||(49028548-49028596)
chr4 (5-53)||(52677555-52677603)
[»] chr8 (4 HSPs)
chr8 (87-198)||(10536098-10536210)
chr8 (87-140)||(10536712-10536765)
chr8 (5-80)||(10536003-10536079)
chr8 (5-70)||(32539452-32539518)
[»] scaffold0008 (1 HSPs)
scaffold0008 (3-53)||(266905-266955)
[»] scaffold0069 (1 HSPs)
scaffold0069 (5-53)||(19898-19946)
[»] chr3 (9 HSPs)
chr3 (5-53)||(31596772-31596820)
chr3 (5-53)||(38758892-38758940)
chr3 (5-80)||(46684101-46684177)
chr3 (5-51)||(11422382-11422428)
chr3 (3-70)||(54446282-54446351)
chr3 (5-53)||(16907933-16907981)
chr3 (5-53)||(18025883-18025931)
chr3 (5-53)||(24107154-24107202)
chr3 (5-53)||(27864802-27864850)
[»] chr6 (4 HSPs)
chr6 (92-147)||(1859061-1859117)
chr6 (5-53)||(3659236-3659284)
chr6 (5-53)||(8286791-8286839)
chr6 (5-45)||(8287458-8287498)


Alignment Details
Target: chr7 (Bit Score: 159; Significance: 7e-85; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 8342735 - 8342537
Alignment:
Q  1 tagtttaattaatgaattggtccattaagatatttgttggttacactttggtct-ataagttactaacattgcgttttggtaatccattagccaaataaa 99  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  8342735 tagtttaattaatgaattggtccattaagttattttttggttacactttggtctcataagttactaacattacgttttggtaatccattagccaaataaa 8342636  T
Q  100 tcatttccgttaaattttgtaaaaaactgttaatcttcatcattaaactcataattcattagtccttcatcctcaaaacccaaaattcatcatccattc 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||| |||| |||||||||||||||||||||||||||    
T  8342635 tcatttccgttaaattttgtaaaaaactgttaatcttcatcattaaacccaaaattcattactcctccatcttcaaaacccaaaattcatcatccattc 8342537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 8329113 - 8328920
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtct-ataagttactaacattgcgttttggtaatccattagccaaataaatcat 103  Q
    ||||||||||||||||||  ||||| ||||||||||||||| |||||||| | |||||| |||| || |||||||||||||||||||| |||||||||||    
T  8329113 ttaattaatgaattggtct-ttaagttatttgttggttacattttggtctcaaaagttattaacgttacgttttggtaatccattagctaaataaatcat 8329015  T
Q  104 ttccgttaaattttgtaaaaaactgttaatcttcatcattaaactcataattcattagtccttcatcctcaaaacccaaaattcatcatccattc 198  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |  ||||||||| ||||| ||| |||||||||||||||||||||||||||    
T  8329014 ttccgttaaattttgtaaaaaactgtcaatcttcatcattaaacccggaattcattactcctttatcttcaaaacccaaaattcatcatccattc 8328920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 81 - 198
Target Start/End: Original strand, 8341924 - 8342040
Alignment:
Q  81 aatccattagccaaataaatcatttccgttaaattttgtaaaaaactgttaatcttcatcattaaactcataattcattagtccttcatcctcaaaaccc 180  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||| |||||| ||    
T  8341924 aatctattagccaaataaatcatttccgttaaattttgtaaaaaactgttaatcttcatcattaaacccagaattcattactccttcatcatcaaaaacc 8342023  T
Q  181 aaaattcatcatccattc 198  Q
     |||||||||| ||||||    
T  8342024 -aaattcatcacccattc 8342040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 8328293 - 8328404
Alignment:
Q  87 ttagccaaataaatcatttccgttaaattttgtaaaaaactgttaatcttcatcattaaactcataattcattagtccttcatcctcaaaacccaaaatt 186  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||| |||||| || |||||| ||||||||    
T  8328293 ttagccaaataaatcctttccgttaaattttgtaaaaaattgttaatcttcataattaaacccataattcattactccttcgtcatcaaaatccaaaatt 8328392  T
Q  187 catcatccattc 198  Q
    ||||| ||||||    
T  8328393 catcacccattc 8328404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 18471744 - 18471691
Alignment:
Q  87 ttagccaaataaatcatttccgttaaattttgtaaaaaactgttaatcttcatc 140  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18471744 ttagccaaataaatcatttccgttaaattttgtaaaaatctgttaatcttcatc 18471691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 18470237 - 18470286
Alignment:
Q  87 ttagccaaataaatcatttccgttaaattttgtaaaaaactgttaatctt 136  Q
    |||| |||||||||| ||||||||||||||| ||||||||||||||||||    
T  18470237 ttagtcaaataaatcctttccgttaaattttataaaaaactgttaatctt 18470286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 18471835 - 18471773
Alignment:
Q  9 ttaatgaattggtccattaagatatttgttggttacactttggtct-ataagttactaacatt 70  Q
    ||||||| ||||||| ||||| ||| ||||||||||| |||||||| |||||||| |||||||    
T  18471835 ttaatgatttggtcccttaagttatctgttggttacattttggtctcataagttattaacatt 18471773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 4734285 - 4734079
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtc-tataagttactaacattgcgttttggt------------aatccattagc 91  Q
    ||||||||||||||||||| ||||| ||||||||||||||| |||| || ||||||||| |||| || |||||||||            ||||  |||||    
T  4734285 ttaattaatgaattggtcccttaagttatttgttggttacattttgatcctataagttattaacgttacgttttggtcccttaacttataatctgttagc 4734186  T
Q  92 caaataaatcatttccgttaaattttgtaaaaaactgttaatcttcatcattaaactcataattcattagtccttcatcctcaaaacccaaaattcatca 191  Q
    |||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||| || ||||||| | ||||||||| ||||||||||||||| ||||    
T  4734185 caaataaatcctttccgttaaattttgtaaaatactgttaatattcatcattaaacccagaattcatcactccttcatcatcaaaacccaaaatttatca 4734086  T
Q  192 tccattc 198  Q
    |||||||    
T  4734085 tccattc 4734079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 4733307 - 4733513
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtct-ataagttactaacattgcgttttggt------------aatccattagc 91  Q
    ||||||||||| ||| ||| ||||  ||||||||||||||| |||||||  |||||||| ||||||| |||||||||            ||||| |||||    
T  4733307 ttaattaatgatttgatcccttaaattatttgttggttacattttggtcccataagttattaacattacgttttggtcccttaatttataatccgttagc 4733406  T
Q  92 caaataaatcatttccgttaaattttgtaaaaaactgttaatcttcatcattaaactcataattcattagtccttcatcctcaaaacccaaaattcatca 191  Q
    |||||||||| |||  |||||||||||||||||||||||||||||||||||||||   | ||||||| | ||||||||| ||||||| || |||||||||    
T  4733407 caaataaatcctttatgttaaattttgtaaaaaactgttaatcttcatcattaaatctagaattcatcactccttcatcatcaaaactcataattcatca 4733506  T
Q  192 tccattc 198  Q
    |||||||    
T  4733507 tccattc 4733513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 14160489 - 14160413
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggt-ctataagttactaacattgcgttttggt 80  Q
    ||||||||||| ||||||||||||| ||||||||||||||  |||||| | |||||||| |||| || |||||||||    
T  14160489 ttaattaatgatttggtccattaagttatttgttggttacgttttggtcccataagttattaacgttacgttttggt 14160413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 4410708 - 4410660
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtc 53  Q
    ||||||||||| ||||||| ||||| ||||||||||||||| |||||||    
T  4410708 ttaattaatgatttggtcccttaagttatttgttggttacaatttggtc 4410660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 14159209 - 14159285
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggt-ctataagttactaacattgcgttttggt 80  Q
    ||||||||||| ||||||| ||||| ||||||||||||||  |||||| | |||||||| |||| || |||||||||    
T  14159209 ttaattaatgatttggtcccttaagttatttgttggttacgttttggtcccataagttattaacgttacgttttggt 14159285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 38695221 - 38695173
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtc 53  Q
    ||||||||||| ||||||| ||||| ||||| ||||||||| |||||||    
T  38695221 ttaattaatgatttggtcccttaagttatttattggttacattttggtc 38695173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 80 - 198
Target Start/End: Complemental strand, 9116042 - 9115924
Alignment:
Q  80 taatccattagccaaataaatcatttccgttaaattttgtaaaaaactgttaatcttcatcattaaactcataattcattagtccttcatcctcaaaacc 179  Q
    |||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||| | ||||||||| ||||||||    
T  9116042 taatccgttagctaaataaatcatttccgttaaattttgtaaaatactgttaatcttcatcattaaacccaaaattcatcactccttcatcatcaaaacc 9115943  T
Q  180 caaaattcatcatccattc 198  Q
    ||||||| |||||||||||    
T  9115942 caaaatttatcatccattc 9115924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 5 - 190
Target Start/End: Original strand, 9114822 - 9115021
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtct-ataagttactaacattgcgttttggt------------aatccattagc 91  Q
    ||||||||||| || |||| ||||| ||||||||||||||| |||||||  |||||||| |||| || |||||||||            ||| | |||||    
T  9114822 ttaattaatgattttgtcccttaagttatttgttggttacattttggtcccataagttattaacgttacgttttggtcccttaatttataattcgttagc 9114921  T
Q  92 caaataaatcatttccgttaaattttgtaaaa-aactgttaatcttcatcattaaactcataattcattagtccttcatcctcaaaacccaaaattcatc 190  Q
    |||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||| |||||||||| | || |||||| |||||||||| ||||||||    
T  9114922 caaataaatcctttctattaaattttgtaaaaaaactgttaatcttcatcattaaacccataattcatcactcattcatcatcaaaacccataattcatc 9115021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 14904664 - 14904459
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtct-ataagttactaacattgcgttttggt------------aatccattagc 91  Q
    ||||||||||| || |||| ||||| ||||||||||||||| |||||||  ||||| || ||||||| |||||||||            ||||  ||||     
T  14904664 ttaattaatgatttagtcccttaagttatttgttggttacattttggtcccataagatattaacattacgttttggtcccttaacttgtaatctgttagt 14904565  T
Q  92 caaataaatcatttccgttaaattttgtaaaaaactgttaatcttcatcattaaactcataattcattagtccttcatcctcaaaacccaaaattcatca 191  Q
    ||||||||||||||| |||||||||| ||||||||| ||||||||||||||| ||| || ||||||| | | ||||||| ||||||| ||||||||||||    
T  14904564 caaataaatcatttctgttaaattttataaaaaactattaatcttcatcattgaacccagaattcatcact-cttcatcatcaaaactcaaaattcatca 14904466  T
Q  192 tccattc 198  Q
     ||||||    
T  14904465 cccattc 14904459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 14903809 - 14903885
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggt-ctataagttactaacattgcgttttggt 80  Q
    ||||||||||| ||||||| ||||| ||||||||||||||| |||| | | |||||||| |||| || |||||||||    
T  14903809 ttaattaatgatttggtcccttaagttatttgttggttacattttgatcccataagttattaacgttacgttttggt 14903885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 14903900 - 14903957
Alignment:
Q  83 tccattagccaaataaatcatttccgttaaattttgtaaaaaactgttaatcttcatc 140  Q
    ||| |||| ||||||||||||||||||||||||  || |||| || ||||||||||||    
T  14903900 tccgttagtcaaataaatcatttccgttaaattgggtgaaaatctattaatcttcatc 14903957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 9116110 - 9116054
Alignment:
Q  25 ttaagatatttgttggttacactttggtct-ataagttactaacattgcgttttggt 80  Q
    ||||| ||||||||||||||| |||||||| |||||||| |||| || |||||||||    
T  9116110 ttaagttatttgttggttacattttggtctcataagttattaacgtttcgttttggt 9116054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 191
Target Start/End: Original strand, 9379933 - 9380134
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggt-ctataagttactaacattgcgttttggt------------aatccattagc 91  Q
    ||||||||||||||||||| ||||| ||||||||||||||| |||||| | | |||||| |||| || |||||||||            |||   |||||    
T  9379933 ttaattaatgaattggtcccttaagttatttgttggttacattttggttccacaagttattaacgttacgttttggtcccttaacttataatatgttagc 9380032  T
Q  92 caaataaatcatttccgttaaattttgtaaaa--aactgttaatcttcatcattaaactcataattcattagtccttcatcctcaaaacccaaaattcat 189  Q
    |||||||||| |||||||||||||||||||||  |||||||||||||||||||||||| || ||||||| | || |||||| ||||||||||||||||||    
T  9380033 caaataaatcctttccgttaaattttgtaaaaaaaactgttaatcttcatcattaaacccagaattcatcactcattcatcatcaaaacccaaaattcat 9380132  T
Q  190 ca 191  Q
    ||    
T  9380133 ca 9380134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 9380691 - 9380594
Alignment:
Q  87 ttagccaaataaatcatttccgttaaattttgtaaaaaactgttaatcttcatcattaaactcataattcattagtccttcatcctcaaaacccaaaa 184  Q
    |||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||| || ||||||| | ||||||||| |||||| ||||||    
T  9380691 ttagtcaaataaatccttcccgttaaattttgtaaaaaactgttaatcttcatcattaaacccaaaattcatcactccttcatcatcaaaatccaaaa 9380594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 23322431 - 23322384
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggt 52  Q
    ||||||||||| ||||||| ||||| ||||||||||||||| ||||||    
T  23322431 ttaattaatgatttggtcccttaagttatttgttggttacattttggt 23322384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 9380786 - 9380741
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttg 50  Q
    ||||||||||||||| ||| ||||| ||||||||||||||| ||||    
T  9380786 ttaattaatgaattgatcccttaagttatttgttggttacattttg 9380741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 34634071 - 34634119
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtc 53  Q
    |||||||||||  |||||| ||||| ||||||||||||||| |||||||    
T  34634071 ttaattaatgatgtggtcctttaagttatttgttggttacaatttggtc 34634119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 43183233 - 43183281
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtc 53  Q
    ||||||||| | ||||||| ||||| ||||||||||||||| |||||||    
T  43183233 ttaattaataatttggtcccttaagttatttgttggttacattttggtc 43183281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 28451609 - 28451403
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtct-ataagttactaacattgcgttttggt------------aatccattagc 91  Q
    ||||||||||| || |||| ||||| ||||||||||||||| |||||||| ||||| || ||||||| |||||||||            ||||  ||||     
T  28451609 ttaattaatgatttagtcccttaagttatttgttggttacattttggtctcataagatattaacattacgttttggtcccttaacttgtaatctgttagt 28451510  T
Q  92 caaataaatcatttccgttaaattttgt-aaaaaactgttaatcttcatcattaaactcataattcattagtccttcatcctcaaaacccaaaattcatc 190  Q
    |||||||||| ||||||||||||||| | |||||||| ||||||||||||||| ||| || ||||||| | | ||||||| ||||||| |||||||||||    
T  28451509 caaataaatcctttccgttaaattttataaaaaaactattaatcttcatcattgaacccagaattcatcact-cttcatcatcaaaactcaaaattcatc 28451411  T
Q  191 atccattc 198  Q
    | ||||||    
T  28451410 acccattc 28451403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 9449718 - 9449792
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtct-ataagttactaacattgcgttttg 78  Q
    ||||||||||| ||||||||||||| ||||||||||||||  |||||||| |||||||| |||| || |||||||    
T  9449718 ttaattaatgatttggtccattaagttatttgttggttacgttttggtctcataagttattaacgttacgttttg 9449792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 45667234 - 45667297
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtct-ataagttactaac 67  Q
    ||||||||||| ||||||| ||||| ||||||||||||||| |||||||| |||||||| ||||    
T  45667234 ttaattaatgatttggtcccttaagttatttgttggttacattttggtctcataagttattaac 45667297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 12585491 - 12585425
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtct-ataagttactaacatt 70  Q
    ||||||||||| ||||||| ||||| ||||||||||||||| |||| ||| |||||||| |||||||    
T  12585491 ttaattaatgatttggtcccttaagttatttgttggttacattttgatctcataagttattaacatt 12585425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 28450848 - 28450901
Alignment:
Q  87 ttagccaaataaatcatttccgttaaattttgtaaaaaactgttaatcttcatc 140  Q
    |||| ||||||||||||||||||||||||  || |||| |||||||||||||||    
T  28450848 ttagtcaaataaatcatttccgttaaattgggtgaaaatctgttaatcttcatc 28450901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 4437683 - 4437759
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggt-ctataagttactaacattgcgttttggt 80  Q
    ||||||||||  ||||||||||||  ||||||||||||||| |||||| | |||||||| |||| || |||||||||    
T  4437683 ttaattaatggtttggtccattaaattatttgttggttacaatttggtcccataagttattaacgttacgttttggt 4437759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 4439106 - 4439030
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtct-ataagttactaacattgcgttttggt 80  Q
    |||||||||||  |||||| | ||| ||||||||||||||| |||||||| |||||||| |||| || |||||||||    
T  4439106 ttaattaatgacgtggtccctaaagttatttgttggttacaatttggtctcataagttattaacgttacgttttggt 4439030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 9450991 - 9450915
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggt-ctataagttactaacattgcgttttggt 80  Q
    ||||||||||| ||||||| ||||| ||||||||||||||  |||||| | |||||||| |||| || |||||||||    
T  9450991 ttaattaatgatttggtcccttaagttatttgttggttacgttttggtcccataagttattaacgttacgttttggt 9450915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 17931291 - 17931339
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtc 53  Q
    ||||||||||||||||||| ||||| ||||| ||||||||| |||||||    
T  17931291 ttaattaatgaattggtcccttaagttatttattggttacaatttggtc 17931339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 17932208 - 17932160
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtc 53  Q
    ||||||||||||||||||| ||||| ||||| ||||||||| |||||||    
T  17932208 ttaattaatgaattggtcccttaagttatttattggttacaatttggtc 17932160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 10468813 - 10468750
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtct-ataagttactaac 67  Q
    ||||||||| | ||||||| ||||| ||||||||||||||| |||||||| |||||||| ||||    
T  10468813 ttaattaatcatttggtcccttaagttatttgttggttacattttggtctcataagttattaac 10468750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 25225793 - 25225856
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtct-ataagttactaac 67  Q
    ||||||||||| ||||||| ||||| ||||||||||||| | |||||||| |||||||| ||||    
T  25225793 ttaattaatgatttggtcccttaagttatttgttggttatattttggtctcataagttattaac 25225856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 9268026 - 9268074
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtc 53  Q
    ||||||||||| ||||||| ||||| ||||| ||||||||| |||||||    
T  9268026 ttaattaatgatttggtcccttaagttatttattggttacattttggtc 9268074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 10286413 - 10286453
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttaca 45  Q
    ||||||||||| ||||||| ||||| |||||||||||||||    
T  10286413 ttaattaatgatttggtcccttaagttatttgttggttaca 10286453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 12315858 - 12315906
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtc 53  Q
    ||||||||||| ||||||| ||||| ||||||| ||||||| |||||||    
T  12315858 ttaattaatgatttggtcctttaagttatttgtaggttacaatttggtc 12315906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 49028596 - 49028548
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtc 53  Q
    ||||||||||| ||||||| ||||| ||||| ||||||||| |||||||    
T  49028596 ttaattaatgatttggtcccttaagttatttattggttacattttggtc 49028548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 52677555 - 52677603
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtc 53  Q
    ||||||||| | ||||||| ||||| ||||||||||||||| |||||||    
T  52677555 ttaattaattatttggtcccttaagttatttgttggttacaatttggtc 52677603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 10536098 - 10536210
Alignment:
Q  87 ttagccaaataaatcatttccgttaaattttgt--aaaaaactgttaatcttcatcattaaactcataattcattagtccttcatcctcaaaacccaaaa 184  Q
    |||| |||||||||| ||||||||||||||| |  |||||||| ||||||||||||||| ||| || ||||||| | | ||||||| ||||||| |||||    
T  10536098 ttagtcaaataaatcctttccgttaaattttataaaaaaaactattaatcttcatcattgaacccagaattcatcact-cttcatcatcaaaactcaaaa 10536196  T
Q  185 ttcatcatccattc 198  Q
    ||||||| ||||||    
T  10536197 ttcatcacccattc 10536210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 10536765 - 10536712
Alignment:
Q  87 ttagccaaataaatcatttccgttaaattttgtaaaaaactgttaatcttcatc 140  Q
    |||| ||||||||||||||||||||||||  || |||| |||||||||||||||    
T  10536765 ttagtcaaataaatcatttccgttaaattgggtgaaaatctgttaatcttcatc 10536712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 10536003 - 10536079
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggt-ctataagttactaacattgcgttttggt 80  Q
    ||||||||||| || |||| ||||| ||||||||||||||| |||||| | ||||| || ||||||| |||||||||    
T  10536003 ttaattaatgatttagtcccttaagttatttgttggttacattttggtcccataagatattaacattacgttttggt 10536079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 32539518 - 32539452
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtct-ataagttactaacatt 70  Q
    ||||||||||| ||||||| ||||| ||||||||||||||| |||  ||| |||||||| |||||||    
T  32539518 ttaattaatgatttggtcccttaagttatttgttggttacattttaatctcataagttattaacatt 32539452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 266955 - 266905
Alignment:
Q  3 gtttaattaatgaattggtccattaagatatttgttggttacactttggtc 53  Q
    ||||||||||||| ||||||| ||||| ||||||||||||||| |||||||    
T  266955 gtttaattaatgatttggtcctttaagttatttgttggttacattttggtc 266905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 19898 - 19946
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtc 53  Q
    ||||||||||| ||||||| ||||| ||||||||||||||| |||||||    
T  19898 ttaattaatgatttggtcccttaagttatttgttggttacattttggtc 19946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 31596820 - 31596772
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtc 53  Q
    ||||||||||| ||||||| ||||| ||||||||||||||| |||||||    
T  31596820 ttaattaatgatttggtcccttaagttatttgttggttacattttggtc 31596772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 38758940 - 38758892
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtc 53  Q
    ||||||||||| ||||||| ||||| ||||||||||||||| |||||||    
T  38758940 ttaattaatgatttggtcccttaagttatttgttggttacattttggtc 38758892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 46684101 - 46684177
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggt-ctataagttactaacattgcgttttggt 80  Q
    ||||||||||| ||||||  ||||| ||||||||||||||| |||| | | |||||||| ||||||| |||||||||    
T  46684101 ttaattaatgatttggtcgcttaagttatttgttggttacattttgatcccataagttattaacattacgttttggt 46684177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 11422382 - 11422428
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttgg 51  Q
    ||||||||||| ||||||| ||||| ||||||||||||||| |||||    
T  11422382 ttaattaatgatttggtcccttaagttatttgttggttacattttgg 11422428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 54446351 - 54446282
Alignment:
Q  3 gtttaattaatgaattggtccattaagatatttgttggttaca-ctttggt-ctataagttactaacatt 70  Q
    ||||||||||||| ||||||| ||||| |||||||| ||||||  |||||| |||||||||| |||||||    
T  54446351 gtttaattaatgatttggtcccttaagttatttgttagttacatttttggtcctataagttattaacatt 54446282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 16907933 - 16907981
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtc 53  Q
    ||||||||||| ||||||| ||||| ||||||||||||||  |||||||    
T  16907933 ttaattaatgatttggtcccttaagttatttgttggttacgttttggtc 16907981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 18025883 - 18025931
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtc 53  Q
    ||||||||||  ||||||| ||||| ||||||||||||||| |||||||    
T  18025883 ttaattaatgctttggtcccttaagttatttgttggttacattttggtc 18025931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 24107154 - 24107202
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtc 53  Q
    ||||||||||| ||||||| || || ||||||||||||||| |||||||    
T  24107154 ttaattaatgatttggtcccttgagttatttgttggttacattttggtc 24107202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 27864802 - 27864850
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtc 53  Q
    ||||||||||| |||||||  |||| ||||||||||||||| |||||||    
T  27864802 ttaattaatgatttggtcccgtaagttatttgttggttacattttggtc 27864850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 1859117 - 1859061
Alignment:
Q  92 caaataaatcatttccgttaaattttgtaa-aaaactgttaatcttcatcattaaac 147  Q
    |||||||||| |||  |||||||||||||| |||||| ||||||||||| |||||||    
T  1859117 caaataaatcttttatgttaaattttgtaaaaaaactattaatcttcataattaaac 1859061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 3659284 - 3659236
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtc 53  Q
    ||||||||||| ||||||| ||||| |||||||| |||||| |||||||    
T  3659284 ttaattaatgatttggtcccttaagttatttgttagttacattttggtc 3659236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 8286791 - 8286839
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttacactttggtc 53  Q
    ||||||||||| || |||| ||||| ||||||||||||||| |||||||    
T  8286791 ttaattaatgatttagtcccttaagttatttgttggttacattttggtc 8286839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 8287498 - 8287458
Alignment:
Q  5 ttaattaatgaattggtccattaagatatttgttggttaca 45  Q
    ||||||||||| ||||||| ||||| |||||||||||||||    
T  8287498 ttaattaatgatttggtcccttaagttatttgttggttaca 8287458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University