View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19934_high_7 (Length: 474)
Name: NF19934_high_7
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19934_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 230 - 468
Target Start/End: Complemental strand, 54277652 - 54277414
Alignment:
| Q |
230 |
catactccactatagaactggaaatctctgcctgaagcctctatggccacactgagtggttgattggcaagtgccttcaataagctttgttcattatttt |
329 |
Q |
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| T |
54277652 |
catactccactatagaactggaaatctctgcctgaagcctctatggccacactgagtggttgattggcaagtgccttcaataagctttgttcattatttt |
54277553 |
T |
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| Q |
330 |
gtggcacgtcatgatatccattaatagtcacaacctcacttacttcctggtgnnnnnnnccaatgaaagttatgttacttataactttagtatgaaacaa |
429 |
Q |
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| T |
54277552 |
gtggcacgtcatgatatccattaatagtcacaacctcacttacttcctggtgaaacaaaccaatgaaagttatgttacttataactttagtatgaaacaa |
54277453 |
T |
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| Q |
430 |
tatgttttagattgaatctatgtacctttttcatctcac |
468 |
Q |
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| T |
54277452 |
tatgttttagattgaatctatgtacctttttcatctcac |
54277414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 54277862 - 54277713
Alignment:
| Q |
20 |
cactataatgtaatccaaaccctttgatgtaccatatccaacggctgacacaccatgatctagctcacttccacaatgtccatcaaacacaccctacaaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54277862 |
cactataatgtaatccaaaccctttgatgtaccatatccaacggctgacacaccatgatctagctcacttccacaatgtccatcaaacacaccctacaaa |
54277763 |
T |
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| Q |
120 |
tggtagttaaataatcagttcatacaattccattaagattagattcaccc |
169 |
Q |
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| T |
54277762 |
tggtagttaaataatcagttcatacaattccattaagattagattcaccc |
54277713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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