View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19934_high_9 (Length: 456)
Name: NF19934_high_9
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19934_high_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 13 - 456
Target Start/End: Complemental strand, 40384288 - 40383845
Alignment:
| Q |
13 |
aatattccaaatgtaggtagcatttaatttggctcccttaaaatttagtttaagctagctctatggctgcattgaaaattttggtattcataaaattgaa |
112 |
Q |
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| T |
40384288 |
aatattccaaatgtaggtagcatttaatttggctcccttaaaatttagtttaagctagctctatggctgcattgaaaattttggtattcataaaatttaa |
40384189 |
T |
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| Q |
113 |
gttgataagctcacaatgatcaccaaccaacctaacaccataaaatggatgttggttgattttgacaaaacaacaacaaacttatatatacaagatgtga |
212 |
Q |
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| T |
40384188 |
gttgataagctcacaatgatcaccaaccaacctaacaccataaaatggatgttggttgattttgacaaaacaacaacaaacttatatatacaagatgtga |
40384089 |
T |
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| Q |
213 |
tcatcacagagaatgatagagcaaaaaattgataaatgtagtataccttaatcccattgtatcctagacgctcgccaagaccgccagcaacaagaacaaa |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40384088 |
tcatcacagagaatgatagagcaaaaaattgataaatgtagtataccttaatcccattgtatcctagacgctcaccaagaccgccagcaacaagaacaaa |
40383989 |
T |
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| Q |
313 |
agcagctctgcgagcttcacgcacacctgcttcctcaaatttgatgaaattctcatcaccaaacgtcaatgtctcaccagttggaacctgcaaaatcatt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40383988 |
agcagctctgcgagcttcacgcacacctgcttcctcaaatttgatgaaattctcatcaccaaacgtcaatgtctcaccagttggaacctgcaaaatcatt |
40383889 |
T |
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| Q |
413 |
actaaacagtcttacacattattccattccacgaacatgcacaa |
456 |
Q |
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| T |
40383888 |
actaaacagtcttacacattattccattccacgaacatgcacaa |
40383845 |
T |
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