View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19934_low_1 (Length: 660)
Name: NF19934_low_1
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19934_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 636; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 4 - 647
Target Start/End: Original strand, 7665834 - 7666477
Alignment:
| Q |
4 |
atactggaagaacaaactagttttgccggtggatagttcattaatccaacaagtgttgcaagagtttcatgcttcaccgattggagggcatgcaggcatt |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7665834 |
atactggaagaacaaactagttttgccggtggatagttcattaatccaacaagtgttgcaagagtttcatgcttcaccgattggagggcatgcaggcatt |
7665933 |
T |
|
| Q |
104 |
actaggactatggcacgaataagtgctgaattttattggccaaatatgaagacggcggttcacaagttcatcacagaatgtctgatctgtcagcaggcta |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7665934 |
actaggactatggcacgaataagtgctgaattttattggccaaatatgaagacggcggttcacaagttcatcacagaatgtctgatctgtcagcaggcta |
7666033 |
T |
|
| Q |
204 |
aacatatgactacactgccagcagggttgttgcagcctctaccaatacccactcaggtatgggaagatgttactatggattttattactgacttgccatt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7666034 |
aacatatgactacactgccagcagggttgttgcagcctctgccaatacccactcaggtatgggaagatgttactatggattttattactgacttgccatt |
7666133 |
T |
|
| Q |
304 |
atcttgtggctttacagccattctagtggttgtggatagattgactaagtacgctcatttcatgccattgaagcctgactattctagtaaatctgttgat |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7666134 |
atcttgtggctttacagccattctagtggttgtggatagattgactaagtacgctcatttcatgccattgaagcctgactattctagtaaatctgttgat |
7666233 |
T |
|
| Q |
404 |
gaagtttttatgactaatatcgtcaaattacatggcatacctaagtccattgtgtcagatagagataaagtttttacaagtaaattttggcagcagttgt |
503 |
Q |
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| T |
7666234 |
gaagtttttatgactaatatcgtcaaattacatggcatacctaagtccattgtgtcagatagagataaagtttttacaagtaaattttggcagcagttgt |
7666333 |
T |
|
| Q |
504 |
ttgagttgcagggcactactttgtcaatgagttcagcataccaccctcaatccgatggtcaatcggaagcagttaacaagactttagaaatgtatttgag |
603 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7666334 |
ttgagttgcagggcactactttgtcaatgagttcagcataccaccctcaatccgatggtcaatcggaagtagttaacaagactttagaaatgtatttgag |
7666433 |
T |
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| Q |
604 |
gtgcattactgctgagaaaccaaagacttgggccaaagctttga |
647 |
Q |
| |
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| T |
7666434 |
gtgcattactgctgagaaaccaaagacttgggccaaagctttga |
7666477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 443 - 606
Target Start/End: Original strand, 14311532 - 14311695
Alignment:
| Q |
443 |
cctaagtccattgtgtcagatagagataaagtttttacaagtaaattttggcagcagttgtttgagttgcagggcactactttgtcaatgagttcagcat |
542 |
Q |
| |
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|||||||| ||| | |||||||||||||| |||||||| ||||| ||||||||||| |||||| || |||| ||||||||| | | |||||||| |||| |
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| T |
14311532 |
cctaagtcgattatctcagatagagataaggtttttactagtaatttttggcagcacttgtttaagatgcaaggcactactctagctatgagttcggcat |
14311631 |
T |
|
| Q |
543 |
accaccctcaatccgatggtcaatcggaagcagttaacaagactttagaaatgtatttgaggtg |
606 |
Q |
| |
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|||| ||||||||| |||||||||| || || || || |||| | | ||||||||||| ||||| |
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| T |
14311632 |
accatcctcaatccaatggtcaatcagaggccgtaaataagattctcgaaatgtatttaaggtg |
14311695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 410 - 570
Target Start/End: Original strand, 14310912 - 14311072
Alignment:
| Q |
410 |
tttatgactaatatcgtcaaattacatggcatacctaagtccattgtgtcagatagagataaagtttttacaagtaaattttggcagcagttgtttgagt |
509 |
Q |
| |
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|||| ||||||||| |||||| |||| || | ||||||| ||| | |||||||||||||| ||||||| ||||| |||| |||||| ||| || || |
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| T |
14310912 |
tttaggactaatattgtcaaactacacggagtcgctaagtcgattatctcagatagagataagatttttactagtaattttttgcagcacttgcttaaga |
14311011 |
T |
|
| Q |
510 |
tgcagggcactactttgtcaatgagttcagcataccaccctcaatccgatggtcaatcgga |
570 |
Q |
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|||| ||||||||| | | ||||||| |||||||| |||||||| |||||||||||||| |
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| T |
14311012 |
tgcaaggcactactctagctatgagtttggcataccatcctcaatctgatggtcaatcgga |
14311072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 257 - 579
Target Start/End: Original strand, 31284451 - 31284773
Alignment:
| Q |
257 |
caggtatgggaagatgttactatggattttattactgacttgccattatcttgtggctttacagccattctagtggttgtggatagattgactaagtacg |
356 |
Q |
| |
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|||||||| || ||||| ||||||||||||||||||| |||||| |||||| ||| ||||| | ||| | || || || ||||| ||| ||| || | |
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| T |
31284451 |
caggtatgtgatgatgtaactatggattttattactggattgccactatcttttggttttactgttattatggtcgtcgtagataggctgagtaaatatg |
31284550 |
T |
|
| Q |
357 |
ctcatttcatgccattgaagcctgactattctagtaaatctgttgatgaagtttttatgactaatatcgtcaaattacatggcatacctaagtccattgt |
456 |
Q |
| |
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||||||||||||| ||||| | || ||||| |||| |||||| ||| | ||||||| |||| | || |||||||| || || |||||||| ||| | |
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| T |
31284551 |
ctcatttcatgcccttgaaagccgattattcaagtaggactgttgctgaggcatttatgaataatgtagtaaaattacacggaatgcctaagtcaattat |
31284650 |
T |
|
| Q |
457 |
gtcagatagagataaagtttttacaagtaaattttggcagcagttgtttgagttgcagggcactactttgtcaatgagttcagcataccaccctcaatcc |
556 |
Q |
| |
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|| |||||||| || || ||||| || ||||| |||||||| |||||| | |||| ||||| || ||||| ||||| |||| || || |||||| | |
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| T |
31284651 |
ctctgatagagacaaggtatttaccagcaaattctggcagcatttgtttcaaatgcaaggcacaacattgtccatgagcacagcttatcatcctcaaacg |
31284750 |
T |
|
| Q |
557 |
gatggtcaatcggaagcagttaa |
579 |
Q |
| |
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||||| ||||| ||||| ||||| |
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| T |
31284751 |
gatggacaatcagaagctgttaa |
31284773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 257 - 579
Target Start/End: Complemental strand, 9620719 - 9620397
Alignment:
| Q |
257 |
caggtatgggaagatgttactatggattttattactgacttgccattatcttgtggctttacagccattctagtggttgtggatagattgactaagtacg |
356 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||| |||||| |||||| ||| ||||| | ||| | || || || ||||| ||| ||| || | |
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| T |
9620719 |
caggtatgggatgatgtaactatggattttattactggattgccactatcttttggttttactgttattatggtcgtcgtagataggctgagtaaatatg |
9620620 |
T |
|
| Q |
357 |
ctcatttcatgccattgaagcctgactattctagtaaatctgttgatgaagtttttatgactaatatcgtcaaattacatggcatacctaagtccattgt |
456 |
Q |
| |
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||||||||||||| ||||| |||| ||||| | || |||||| ||| | ||| ||| | || | || |||||||| || || |||||||| ||| | |
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| T |
9620619 |
ctcatttcatgcccttgaaagctgattattcaaataggactgttgctgaggcatttgtgaattatgtagtaaaattacacggaatgcctaagtcaattat |
9620520 |
T |
|
| Q |
457 |
gtcagatagagataaagtttttacaagtaaattttggcagcagttgtttgagttgcagggcactactttgtcaatgagttcagcataccaccctcaatcc |
556 |
Q |
| |
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|| |||||||| || || ||||| || ||||| |||||||| |||||| | |||| ||||| || ||||| ||||| || | || || |||||| | |
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| T |
9620519 |
ctctgatagagacaaggtatttaccagcaaattctggcagcatttgtttcaaatgcaaggcacaacattgtccatgagcacaacttatcatcctcaaacg |
9620420 |
T |
|
| Q |
557 |
gatggtcaatcggaagcagttaa |
579 |
Q |
| |
|
||||| ||||| ||||| ||||| |
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| T |
9620419 |
gatggacaatcagaagctgttaa |
9620397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 432 - 519
Target Start/End: Original strand, 10996298 - 10996385
Alignment:
| Q |
432 |
tacatggcatacctaagtccattgtgtcagatagagataaagtttttacaagtaaattttggcagcagttgtttgagttgcagggcac |
519 |
Q |
| |
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|||||||||| || ||||||||||| ||| ||||||| || |||||||||||| ||| |||||| | |||||| | |||||||||| |
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| T |
10996298 |
tacatggcattcccaagtccattgtttcaaatagagacaaggtttttacaagtggattctggcagaacttgtttaaactgcagggcac |
10996385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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