View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19934_low_11 (Length: 453)
Name: NF19934_low_11
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19934_low_11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 45 - 453
Target Start/End: Complemental strand, 10398567 - 10398159
Alignment:
| Q |
45 |
acaaacaaccgccgacctagaacccgtgaagtcagctcgcgattcatgaccccctccgcctccaccactcaccgacgccaacaacgtgacgattccgacg |
144 |
Q |
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| T |
10398567 |
acaaacaaccgccgacctagaacccgtgaagtcagctctcgattcatgaccccctccgcctccaccactcaccgacgccaacaacgtgacgattccgacg |
10398468 |
T |
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| Q |
145 |
acgaaaattctgaatcttcaatccccatcggttattcttttcagagaaaacaattacaacaaagagctattaaacttttcaaagaatccacaaataatag |
244 |
Q |
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| T |
10398467 |
acgaaaattctgaatcttcattccccatcggttattcttttcagaaaaaacaattacaacaaagagctattaaacttttcaaagaatccacaaataatag |
10398368 |
T |
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| Q |
245 |
ggttttcgaaaatacaccaaactctaaccctaattttcattctcattctcatcaccctcctaaatcaacaacttcgagaattgaaagaatcaattctact |
344 |
Q |
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| T |
10398367 |
ggttttcgaaaatacaccaaaccctaaccctaattttcattctcattctcatcaccctcctaaatcaacaacttcgagaattgaaagaatcaattctact |
10398268 |
T |
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| Q |
345 |
tccactccttgtgcttctagacctgatactccaacaatttctgtttcgtccagatacagacacacaccaaatcatcaccaacaacatcataggtctatta |
444 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10398267 |
tccactccttgtgcttctagacctgatactccaacaatttctgtttcgtccagatacagacacacaccaaatcatcaccaacaacatcataggtctatta |
10398168 |
T |
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| Q |
445 |
ccaattcac |
453 |
Q |
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| T |
10398167 |
gcaattcac |
10398159 |
T |
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