View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19934_low_12 (Length: 435)
Name: NF19934_low_12
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19934_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 189 - 362
Target Start/End: Complemental strand, 30831587 - 30831416
Alignment:
| Q |
189 |
aggatacacgttagcataaccctaaatcgccaaaattcaccatagacgaaagtagttttatttataattgagaccacaaagagagtgtgtgttcaaccaa |
288 |
Q |
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| T |
30831587 |
aggacacacgttagcataattctaaatcgcgaaaattcaccatagacaaaagtagttttatttataattgagaccacaaagagagtgtgtgttcaaccaa |
30831488 |
T |
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| Q |
289 |
gatacaaacaaaatagatttctctctttcaaatcaataatgcatgtggtggtcattcgataaagaggattggtt |
362 |
Q |
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| T |
30831487 |
gatacaaacaaaatagattt--ctctttcaaatcaataatgcatgtggtggtcattcgataaagaggataggtt |
30831416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 415
Target Start/End: Complemental strand, 30831368 - 30831327
Alignment:
| Q |
374 |
taacaaagacacatcttgataaaacaaaatattaacaaaggg |
415 |
Q |
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| T |
30831368 |
taacaaagacacatcttgataaaataaaatattaacaaaggg |
30831327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 30831755 - 30831716
Alignment:
| Q |
31 |
tttatggaaaatgctaaacaacgtctttagaacattggtt |
70 |
Q |
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| T |
30831755 |
tttatggaaaatgttaaacaacgtctttagaacattggtt |
30831716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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