View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19934_low_14 (Length: 423)

Name: NF19934_low_14
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19934_low_14
NF19934_low_14
[»] chr8 (8 HSPs)
chr8 (1-283)||(16616795-16617077)
chr8 (5-276)||(16628499-16628770)
chr8 (5-276)||(16637380-16637651)
chr8 (13-279)||(16792446-16792711)
chr8 (28-279)||(16790548-16790799)
chr8 (286-404)||(16617106-16617224)
chr8 (5-204)||(16790077-16790276)
chr8 (5-238)||(16791450-16791682)
[»] chr4 (3 HSPs)
chr4 (155-283)||(38877455-38877583)
chr4 (13-122)||(38877337-38877446)
chr4 (323-404)||(38877635-38877716)


Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 16616795 - 16617077
Alignment:
Q  1 atggtcaatgcaaataattcaagacagaatataaaatcatttacctttttatcagaagtaaagtgagatacaaggttttgattgatagacactgcattgt 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16616795 atggtcaatgcaaataattcaaaacagaatataaaatcatttacctttttatcagaagtaaagtgagatacaaggttttgattgatagacactgcattgt 16616894  T
Q  101 acataattttcacaagtaatccttcattttgttcggcagctactccaactaaattttcaacaatttccttttcagcgataaccacctcactgtcgaacaa 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||    
T  16616895 acataattttcacaagtaatccttcactttgttcggcagctactccaactacactttcaacaatttcctttttagcgataaccacctcactgtcgaacaa 16616994  T
Q  201 tcgactgttaatgtcttttatttctgctaaaatattctgattttcctgctacagttaacaatgtgacagtaaaattcttgtaa 283  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16616995 tcgattgttaatgtcttttatttctgctaaaatattctgattttcctgctacagttaacaatgtgacagtaaaattcttgtaa 16617077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 5 - 276
Target Start/End: Original strand, 16628499 - 16628770
Alignment:
Q  5 tcaatgcaaataattcaagacagaatataaaatcatttacctttttatcagaagtaaagtgagatacaaggttttgattgatagacactgcattgtacat 104  Q
    |||| ||||||||||| | ||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| | |||||||||||||||    
T  16628499 tcaacgcaaataattccaaacagaatataaaaacatttacctttttatcggaagtgaagtgagatacaaggttttgattgatggtcactgcattgtacat 16628598  T
Q  105 aattttcacaagtaatccttcattttgttcggcagctactccaactaaattttcaacaatttccttttcagcgataaccacctcactgtcgaacaatcga 204  Q
     ||||| |||||||||||| ||  |||||||| ||||| ||| |||||  |||||||| ||||||||||| ||||||||||||||| ||| |||||||||    
T  16628599 gattttaacaagtaatcctccaacttgttcggaagctaatcctactaacctttcaacattttccttttcaccgataaccacctcacagtcaaacaatcga 16628698  T
Q  205 ctgttaatgtcttttatttctgctaaaatattctgattttcctgctacagttaacaatgtgacagtaaaatt 276  Q
     | || |||||||||||||||||||||| ||||||| |||||||||| ||| |||||||||||| |||||||    
T  16628699 ttatttatgtcttttatttctgctaaaacattctgaatttcctgctagagtcaacaatgtgacaataaaatt 16628770  T

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Target: chr8; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 5 - 276
Target Start/End: Original strand, 16637380 - 16637651
Alignment:
Q  5 tcaatgcaaataattcaagacagaatataaaatcatttacctttttatcagaagtaaagtgagatacaaggttttgattgatagacactgcattgtacat 104  Q
    |||| ||||||||||| | ||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| | |||||||||||||||    
T  16637380 tcaacgcaaataattccaaacagaatataaaaacatttacctttttatcggaagtgaagtgagatacaaggttttgattgatggtcactgcattgtacat 16637479  T
Q  105 aattttcacaagtaatccttcattttgttcggcagctactccaactaaattttcaacaatttccttttcagcgataaccacctcactgtcgaacaatcga 204  Q
     ||||| |||||||||||| ||  |||||||| ||||| ||| |||||  |||||||| ||||||||||| ||||||||||||||| ||| |||||||||    
T  16637480 gattttaacaagtaatcctccaacttgttcggaagctaatcctactaacctttcaacattttccttttcaccgataaccacctcacagtcaaacaatcga 16637579  T
Q  205 ctgttaatgtcttttatttctgctaaaatattctgattttcctgctacagttaacaatgtgacagtaaaatt 276  Q
     | || |||||||||||||||||||||| ||||||| |||||||||| ||| |||||||||||| |||||||    
T  16637580 ttatttatgtcttttatttctgctaaaacattctgaatttcctgctagagtcaacaatgtgacaataaaatt 16637651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 16792446 - 16792711
Alignment:
Q  13 aataattcaagacagaatataaaatcatttacctttttatcagaagtaaagtgagatacaaggttttgattgatagacactgcattgtacataattttca 112  Q
    ||||||| || ||| ||||||||||||||||| |||||||||||| | |||||||||||| || |||||||||||| || |||| ||||||| ||||| |    
T  16792446 aataattgaaaacataatataaaatcatttacatttttatcagaaatgaagtgagatacatggctttgattgatagtcattgcaatgtacatgattttaa 16792545  T
Q  113 caagtaatccttcattttgttcggcagctactccaactaaattttcaacaatttccttttcagcgataaccacctcactgtcgaacaatcgactgttaat 212  Q
    ||||||||| |||| ||||||||  ||||||||| |    | |||| | | ||||||||||| |||||||||||||| |||| |||||| || |||| ||    
T  16792546 caagtaatcattcaatttgttcgaaagctactcctagcgcactttc-atattttccttttcaacgataaccacctcattgtcaaacaattgattgtttat 16792644  T
Q  213 gtcttttatttctgctaaaatattctgattttcctgctacagttaacaatgtgacagtaaaattctt 279  Q
    |||| |||| | |||||||| |||||||||||| || || |||||||||||||||| |||| |||||    
T  16792645 gtctattatatttgctaaaagattctgattttcatgttagagttaacaatgtgacattaaagttctt 16792711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 28 - 279
Target Start/End: Original strand, 16790548 - 16790799
Alignment:
Q  28 aatataaaatcatttacctttt-tatcagaagtaaagtgagatacaaggttttgattgatagacactgcattgtacataattttcacaagtaatccttca 126  Q
    ||||||||||||||||| |||| |||||||||| || ||||||||| || |||||||||||| || |||||||||||| ||||| |||||||||| ||||    
T  16790548 aatataaaatcatttacattttttatcagaagtgaaatgagatacatggctttgattgatagtcattgcattgtacatgattttaacaagtaatcattca 16790647  T
Q  127 ttttgttcggcagctactccaactaaattttcaacaatttccttttcagcgataaccacctcactgtcgaacaatcgactgttaatgtcttttatttctg 226  Q
     ||||||||  ||||||||| |    | |||| | | ||||| ||||| |||||||||||||| |||| |||||| || |||| |||||| |||||| ||    
T  16790648 atttgttcgaaagctactcctagcgcactttc-atattttccctttcaacgataaccacctcattgtcaaacaattgattgtttatgtctattatttttg 16790746  T
Q  227 ctaaaatattctgattttcctgctacagttaacaatgtgacagtaaaattctt 279  Q
    |||||| |||||||||||  || || ||||||||||||||||| ||| |||||    
T  16790747 ctaaaagattctgattttaatgatagagttaacaatgtgacaggaaagttctt 16790799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 286 - 404
Target Start/End: Original strand, 16617106 - 16617224
Alignment:
Q  286 ttctcgtagatttcaatggtagnnnnnnnggaggaggaagattaccacagctggagggcattttcctttcattgtgaatgaatccagttcaggtgctgca 385  Q
    |||| |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||    
T  16617106 ttctagtagatttcaatggtagaaaaaaaggaggaggaagattaccacagctggagggcattttcctttcattgtgaatgaatccggttcaggtgccgca 16617205  T
Q  386 acgtcagtgaactgattga 404  Q
    |||||||||||||||||||    
T  16617206 acgtcagtgaactgattga 16617224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 5 - 204
Target Start/End: Complemental strand, 16790276 - 16790077
Alignment:
Q  5 tcaatgcaaataattcaagacagaatataaaatcatttacctttttatcagaagtaaagtgagatacaaggttttgattgatagacactgcattgtacat 104  Q
    |||||||||||| || || | ||||||||||| ||||||||||||||||| |||| ||||||||||||||||| |||| ||||| |||||||||||||||    
T  16790276 tcaatgcaaatagttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaaggttctgatcgatagtcactgcattgtacat 16790177  T
Q  105 aattttcacaagtaatccttcattttgttcggcagctactccaactaaattttcaacaatttccttttcagcgataaccacctcactgtcgaacaatcga 204  Q
     ||||| |||| | |||||||| | |||||||  |||||||| |    | |||||||| ||||||||||||| ||||||| ||||  ||| |||||||||    
T  16790176 gattttaacaattgatccttcactatgttcggtcgctactcctagcgcactttcaacattttccttttcagcaataaccatctcatagtcaaacaatcga 16790077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 16791682 - 16791450
Alignment:
Q  5 tcaatgcaaataattcaagacagaatataaaatcatttacctttttatcagaagtaaagtgagatacaaggttttgattgatagacactgcattgtacat 104  Q
    |||||||||||| || || | |||||||||||||| |||||||||||||| |||| |||||||||||| |||| |||||||||| |||||||||||||||    
T  16791682 tcaatgcaaatagttgaaaatagaatataaaatcacttacctttttatcataagtgaagtgagatacatggttctgattgatagtcactgcattgtacat 16791583  T
Q  105 aattttcacaagtaatccttcattttgttcggcagctactccaactaaattttcaacaatttccttttcagcgataaccacctcactgtcgaacaatcga 204  Q
     ||||| | | || | |||||| ||||||||   |||||||| | |  | |||||| | ||||||||||||||||||||| ||||  |||| | ||||||    
T  16791582 gattttaatacgtgacccttcactttgttcgatggctactcctaatgcactttcaatattttccttttcagcgataaccatctcatagtcg-agaatcga 16791484  T
Q  205 ctgttaatgtcttttatttctgctaaaatattct 238  Q
     |||| |||| |||||||||  |||||| |||||    
T  16791483 ttgtttatgttttttatttccactaaaagattct 16791450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 9e-43; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 155 - 283
Target Start/End: Original strand, 38877455 - 38877583
Alignment:
Q  155 tttcaacaatttccttttcagcgataaccacctcactgtcgaacaatcgactgttaatgtcttttatttctgctaaaatattctgattttcctgctacag 254  Q
    |||||||| |||||| |||||||||||||||||||| |||||||||| || |||| ||||||||||||||||||||||| |||||||||| |||||| ||    
T  38877455 tttcaacattttcctgttcagcgataaccacctcacagtcgaacaattgattgtttatgtcttttatttctgctaaaatgttctgatttttctgctagag 38877554  T
Q  255 ttaacaatgtgacagtaaaattcttgtaa 283  Q
    ||||||||||| |||||||||||||||||    
T  38877555 ttaacaatgtgtcagtaaaattcttgtaa 38877583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 38877337 - 38877446
Alignment:
Q  13 aataattcaagacagaatataaaatcatttacctttttatcagaagtaaagtgagatacaaggttttgattgatagacactgcattgtacataattttca 112  Q
    |||| ||||| ||||||||||||| |||| |||||||||||| | || ||||||||||||||||  ||||| |||| ||||||||||||||| ||||| |    
T  38877337 aatagttcaaaacagaatataaaaccattcacctttttatcatatgtcaagtgagatacaaggtcctgattcatagtcactgcattgtacatgattttaa 38877436  T
Q  113 caagtaatcc 122  Q
     |||||||||    
T  38877437 gaagtaatcc 38877446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 404
Target Start/End: Original strand, 38877635 - 38877716
Alignment:
Q  323 aagattaccacagctggagggcattttcctttcattgtgaatgaatccagttcaggtgctgcaacgtcagtgaactgattga 404  Q
    ||||||||||||| | ||||||||||||||||||||||| |||||| ||  |||| | |||||  ||||| |||||||||||    
T  38877635 aagattaccacagtttgagggcattttcctttcattgtggatgaattcaagtcagcttctgcagagtcagcgaactgattga 38877716  T

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