View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19934_low_15 (Length: 423)
Name: NF19934_low_15
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19934_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 3700823 - 3701241
Alignment:
| Q |
1 |
agagttgaactcaaagaaagcatctacatacaggggttaatttccaaagtgtctcaaagacattatagaggtgata----ataataacctaagagcaact |
96 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3700823 |
agagttgaactcaa-gaaagcatctacatataggggt--atttccaaagtgtctcaaagacattatagaggtgataatagataataacctaagagcaact |
3700919 |
T |
|
| Q |
97 |
ttaacggacgatatcatcatccatttttatgatttttactaaagtttgcggtttgagagatctccggcacaacaatnnnnnnntgtattatttatgcata |
196 |
Q |
| |
|
||||||||| || |||||||||| ||||||| |||||| |||||||||| |||||||||||||||| ||||||| | |||||||| ||||| || |
|
|
| T |
3700920 |
ttaacggacaatgtcatcatcca-ttttatggtttttattaaagtttgctgtttgagagatctccgacacaacagtaaaaaaatgtattatatatgcgta |
3701018 |
T |
|
| Q |
197 |
aatgagttaaattgttgaaattcaatgtgagtttcttaatattgtccgttggagtnnnnnnnnnnnnngaatgaattattttatgatatggctcaatgag |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3701019 |
aatgagttaaattgttgaaattcaatgtgagtttcttaatattgtccattggagt--aaaaaaaaaaagaatgaattattttatgatatggctcaatgag |
3701116 |
T |
|
| Q |
297 |
atacaaaataatctttaaagaagatcaccattgtagttgctctaaaga-----------------gtccgtaaattcttcacctaaaatattctaactta |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3701117 |
atacaaaataatctttaaagaagatcaccattgtagttgctctaaagactaaaatagaatctattgtccgtaaattcttcacctaaaatattctaactta |
3701216 |
T |
|
| Q |
380 |
actctttgacataaactcgagcact |
404 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
3701217 |
actctttgacataaactcgggcact |
3701241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 3715080 - 3715125
Alignment:
| Q |
299 |
acaaaataatctttaaagaagatcaccattgtagttgctctaaaga |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3715080 |
acaaaataatctttaaagaagatcaccattgaagttgctctaaaga |
3715125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 3714853 - 3714918
Alignment:
| Q |
14 |
aagaaagcatctacatacaggggttaatttccaaagtgtctcaaagacattatagaggtgataata |
79 |
Q |
| |
|
||||||||||||||||| ||||||| |||| ||| |||||||||||| | || ||||||||||||| |
|
|
| T |
3714853 |
aagaaagcatctacatataggggttgatttgcaaggtgtctcaaagatactacagaggtgataata |
3714918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 3715143 - 3715184
Alignment:
| Q |
345 |
gtccgtaaattcttcacctaaaatattctaacttaactcttt |
386 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
3715143 |
gtccgtaaattcttaacctaaaatattctaagttaactcttt |
3715184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University