View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19934_low_16 (Length: 421)
Name: NF19934_low_16
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19934_low_16 |
 | |
|
| [»] chr7 (6 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 8343218 - 8342798
Alignment:
| Q |
1 |
aacaaatttatttttcctaagttattttgtcgcaatgatgagggccaaactaagaagtatattatgtgttaacacacttaatttcttgtcaatcaatgga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8343218 |
aacaaatttatttttcctaagttattttgtcgcaatgatgagggccaaactaagaagtatattatgtgttaacacacttaatttcctgtcaatcaatgga |
8343119 |
T |
|
| Q |
101 |
taaaatttaacttacgctcatctatgtcatagttaatctatgtcggaacacatttgaagagaaagataaagtctataatgtcacaaaccaggccgaagcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8343118 |
taaaatttaacttacgctcatctatgtcatagttaatctatgtcggaacacatttgaagagaaagataaagtctataatgtcacaaaccaggccgaagcc |
8343019 |
T |
|
| Q |
201 |
gaaaatgtttcatcaagggtactctataaaatctcacgtggtaagttagctaataacaaacaagtcccacatcggaactttgtaaaatttagtgagagta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8343018 |
gaaaatgtttcatcaagggtactctataaaatctcatgtggtaagttagctaataacaaacaagtcccacatcggaactttgtgaaatttagtgagagta |
8342919 |
T |
|
| Q |
301 |
agttttgctataaaaccagcgtgtgtttcagctttgttcatcaaggctttttgagtatgaggttgaggatttatctagcaggagcggtaggtaaatttga |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8342918 |
agttttgctataaaaccagcgtgtgtttctgctttgttcatcaacgatatttgagtatgaggttgaggatttatctagcaggagcggtaggtaaatttga |
8342819 |
T |
|
| Q |
401 |
tattcaacaaattaggtaata |
421 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
8342818 |
tattcaacaaattaggtaata |
8342798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 249 - 421
Target Start/End: Complemental strand, 8419389 - 8419216
Alignment:
| Q |
249 |
gctaataacaaacaagtcccacatcggaactttgtaaaatttagtgagagtaagttttgctataaaaccagcgtgtgtt-tcagctttgttcatcaaggc |
347 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||| || ||||| || ||||||||||||||||| |
|
|
| T |
8419389 |
gctaataacaaacaagccccacatcggaactttgtaaaatatagtgagagtaagttttgttataaaaccaacgcgtgttctctgctttgttcatcaaggc |
8419290 |
T |
|
| Q |
348 |
tttttgagtatgaggttgaggatttatctagcaggagcggtaggtaaatttgatattcaacaaattaggtaata |
421 |
Q |
| |
|
||| |||||||||| ||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
8419289 |
tttctgagtatgagtttgaggatttatctagctggagcggtgagtaaatttgatatcgaacaaattaggtaata |
8419216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 8329415 - 8329301
Alignment:
| Q |
11 |
tttttcctaagttattttgtcgcaatgatgagggccaaactaagaagtatattatgtgttaacacacttaatttcttgtcaatcaatggataaaatttaa |
110 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8329415 |
tttttcctaagttattttgtcacaatgatgagggccaaactaagaagtatattatgtgttaacacacttaatttcctgtcaatcaatggataaaatttaa |
8329316 |
T |
|
| Q |
111 |
cttacgctcatctat |
125 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
8329315 |
cttacggtcatctat |
8329301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 8329302 - 8329246
Alignment:
| Q |
231 |
atctcacgtggtaagttagctaataacaaacaagtcccacatcggaactttgtaaaa |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
8329302 |
atctcacgtggtaagttagctaataacaaacaagcctcacatcggaactttgtaaaa |
8329246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 386 - 421
Target Start/End: Complemental strand, 8329215 - 8329180
Alignment:
| Q |
386 |
ggtaggtaaatttgatattcaacaaattaggtaata |
421 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8329215 |
ggtaggtaaatttgatattcaacaatttaggtaata |
8329180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 8356436 - 8356378
Alignment:
| Q |
258 |
aaacaagtcccacatcggaactttgtaaaatttagtgagagtaagttttgctataaaacca |
318 |
Q |
| |
|
||||||||||||||| |||||||||| |||| |||| |||| ||||||| |||||||||| |
|
|
| T |
8356436 |
aaacaagtcccacataggaactttgtgaaatatagt--gagtgagttttgttataaaacca |
8356378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University