View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19934_low_18 (Length: 402)
Name: NF19934_low_18
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19934_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 4e-88; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 42 - 242
Target Start/End: Original strand, 3271725 - 3271926
Alignment:
| Q |
42 |
tagaagaaaggaagagtatttgtaggtagagagaatcacatagactgtatctacatcagatgattttgtacaaacccactatctcattgaaacaaatttt |
141 |
Q |
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| T |
3271725 |
tagaagaaaggaagagtatttgtgggtagagagaatcacatagactgtatctacatcagatgattttgtacaaacccactatctcattgaaacaaatttt |
3271824 |
T |
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| Q |
142 |
tagtatatatatttggtacaaagaaagtcatggaagtgcaaattaatagtatgtggac-nnnnnnnacttattgagcaaaaagcaaagcaattttattta |
240 |
Q |
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| T |
3271825 |
tagtatatatatttggtacaaagaaagtcatggaagtgcaaattaatagtgtgtggacttttttttacttattgagcaaaaagcaaagcaattttattta |
3271924 |
T |
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| Q |
241 |
aa |
242 |
Q |
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|| |
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| T |
3271925 |
aa |
3271926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 239 - 386
Target Start/End: Original strand, 3272134 - 3272281
Alignment:
| Q |
239 |
taaacaaagtctctttagtgattgacacaagaccctttaggtgaaatgatattagtggctgttccatgaacattgttgcactttacagaagctggtttct |
338 |
Q |
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| T |
3272134 |
taaacaaagtctctttagtgattgacacaagaccctttaggtgaaatgatattagtggctgttccatgaacatttttacactttacagaagctggtttct |
3272233 |
T |
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| Q |
339 |
ttcgattaattgaagtaattttgatttgattaagggtgatatcataac |
386 |
Q |
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| T |
3272234 |
ttcgattaattgaagtaattttgatttgattaagggtgatatcataac |
3272281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 277 - 372
Target Start/End: Original strand, 3277900 - 3277995
Alignment:
| Q |
277 |
aggtgaaatgatattagtggctgttccatgaacattgttgcactttacagaagctggtttctttcgattaattgaagtaattttgatttgattaag |
372 |
Q |
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| T |
3277900 |
aggtgcaatgatatcattggctgttccatgaacatttttgcactttaccgaagctggtttctttcgattaattgaagtaatgttgatttgattaag |
3277995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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