View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19934_low_19 (Length: 402)
Name: NF19934_low_19
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19934_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 5 - 385
Target Start/End: Complemental strand, 46199614 - 46199228
Alignment:
| Q |
5 |
ttaaagttaaaggaatcaaaattgcaattaaaccaaaaataatctaatggctaatggcttgcatgtt---cacgtaacctaagcctaaaaatgttgttct |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
46199614 |
ttaaagttaaaggaatcaaaattgcaattaaaccaaaaataatctaatggctaatggcttgcatgtttgccacgtaacctaagcctaaaaatgttgttct |
46199515 |
T |
|
| Q |
102 |
tcagcacttgattttgattggttgcgctttcctagccatc--attgtcgagcaaaattccttattt-gccagtcataatcaagatcaggagtaaccagta |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | |
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| T |
46199514 |
tcagcacttgattttgattggttgcgctttcctagccatattattgtcgagcaaaattccttattttgtcagtcataatcaagatcaggagtaaccagca |
46199415 |
T |
|
| Q |
199 |
caaaaataaacataaataacaatgcaaaagctttaaagagattatatttggtgtcatcatctggctcttgtattggcgctggagctgacactagcaatgg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||| |
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| T |
46199414 |
caaaaataaacataaataacaatgcaaaagctttaaagagattatatttggtgtcatcatctggctcttgtattggcgctggtgctgacgcaagcaatgg |
46199315 |
T |
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| Q |
299 |
agaatttggagtataacttggtagtgcctttgaactttcactttttggagccagattggaaaccgaattttctaaagcatttggttt |
385 |
Q |
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| T |
46199314 |
agaatttggagtataacttggtagtgcctttgaactttcactttttggagccagattggaaaccgaattttctaaagcatttggttt |
46199228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 334
Target Start/End: Complemental strand, 46018661 - 46018590
Alignment:
| Q |
263 |
ctcttgtattggcgctggagctgacactagcaatggagaatttggagtataacttggtagtgcctttgaact |
334 |
Q |
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| T |
46018661 |
ctcttgcattggtgctggtgctgtcagtaacaatggagaatttggagcataacttgaaagtgactttgaact |
46018590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 334
Target Start/End: Original strand, 46247949 - 46248020
Alignment:
| Q |
263 |
ctcttgtattggcgctggagctgacactagcaatggagaatttggagtataacttggtagtgcctttgaact |
334 |
Q |
| |
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|||||| ||||| ||||| |||| || || ||||||||||||||||| |||||||| |||| ||||||||| |
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| T |
46247949 |
ctcttgcattggtgctggtgctgtcagtaacaatggagaatttggagcataacttgaaagtgactttgaact |
46248020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 331
Target Start/End: Complemental strand, 46354323 - 46354281
Alignment:
| Q |
289 |
ctagcaatggagaatttggagtataacttggtagtgcctttga |
331 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||| |
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| T |
46354323 |
ctagcaatggagaatttggatcataacttggtagtggctttga |
46354281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 5 - 385
Target Start/End: Original strand, 34280497 - 34280883
Alignment:
| Q |
5 |
ttaaagttaaaggaatcaaaattgcaattaaaccaaaaataatctaatggctaatggcttgcatgtt---cacgtaacctaagcctaaaaatgttgttct |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34280497 |
ttaaagttaaaggaatcaaaattgcaattaaaccaaaaataatctaatggctaatggcttgcatgtttgccacgtaacctaagcctaaaaatgttgttct |
34280596 |
T |
|
| Q |
102 |
tcagcacttgattttgattggttgcgctttcctagccatc--attgtcgagcaaaattccttattt-gccagtcataatcaagatcaggagtaaccagta |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | |
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| T |
34280597 |
tcagcacttgattttgattggttgcgctttcctagccatattattgtcgagcaaaattccttattttgtcagtcataatcaagatcaggagtaaccagca |
34280696 |
T |
|
| Q |
199 |
caaaaataaacataaataacaatgcaaaagctttaaagagattatatttggtgtcatcatctggctcttgtattggcgctggagctgacactagcaatgg |
298 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||| |
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| T |
34280697 |
caaaaataaacataaataacaatgcaaaagctttaaagagattatatttggtgtcatcatctggctcttgtattggcgctggtgctgacgcaagcaatgg |
34280796 |
T |
|
| Q |
299 |
agaatttggagtataacttggtagtgcctttgaactttcactttttggagccagattggaaaccgaattttctaaagcatttggttt |
385 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34280797 |
agaatttggagtataacttggtagtgcctttgaactttcactttttggagccagattggaaaccgaattttctaaagcatttggttt |
34280883 |
T |
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