View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19934_low_2 (Length: 634)
Name: NF19934_low_2
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19934_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 590; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 18 - 619
Target Start/End: Original strand, 2827552 - 2828153
Alignment:
| Q |
18 |
ctaaccctgtcaattgtccccggattcttgtatgaaaatactggatcacatcagctaggaaaatggttaattcattatcatttccctaatcttttgtttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2827552 |
ctaaccctgtcaattgtccccggattcttgtatgaaaatactggatcacatcagctaggaaaatggttaattcattatcatttccctaatcttttgtttt |
2827651 |
T |
|
| Q |
118 |
aataatccatgtggttttattacatgatgacacatttggtagttctttttaggtacgcgctggttttgatcgcggtgtttaatgtctcggatttaacatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2827652 |
aataatccatgtggttttattacatgatgacacatttggtagttctttttaggtacgcgctggttttgatcgcggtgtttaatgtctcggatttaatatc |
2827751 |
T |
|
| Q |
218 |
cagatatattcccctcctcaaattcctgaagttggagtcaagaaagtgcttactcgctgcagttctttctagattactattgatccctgcattttacttc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2827752 |
cagatatattcccctcctcaaattcctgaagttggagtcaagaaagtgcttactcgctgcaattctttctagattactattgatccctgcattttacttc |
2827851 |
T |
|
| Q |
318 |
acagcaaaatatggtgaccaaggatggatgattatgcttgtttctttcttaggactaacaaatggctatctcactgtttgtgtgctaacagttgcaccaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2827852 |
acagcaaaatatggtgaccaaggatggatgattatgcttgtttctttcttaggactaacaaatggctatctcactgtttgtgtgctaacagttgcaccaa |
2827951 |
T |
|
| Q |
418 |
aaggttacaaggtaaaacatgttatcaatcatttttaatctatatattcatgaattatttgtgtagtataaactgtgtacatcaattggttttaatgttt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2827952 |
aaggttacaaggtaaaacatgttatcaatcatttttaatctatatattcatgaattatttgtgtagtataaactgtgtacatcaattggttttaatgttt |
2828051 |
T |
|
| Q |
518 |
gattattagtcaaaggtttattatggttttgttacttttgtaggctcctgaacagaatgcactaggtaatattcttgtgttgtttcttatgtgtggcata |
617 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2828052 |
gattattagtcaaaggtttattatgcttttgttacttttgtaggctcctgaacagaatgcactaggtaatattcttgtgttgtttcttatgtgtggcata |
2828151 |
T |
|
| Q |
618 |
tt |
619 |
Q |
| |
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|| |
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|
| T |
2828152 |
tt |
2828153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 34 - 382
Target Start/End: Original strand, 2820236 - 2820585
Alignment:
| Q |
34 |
tccccggattcttgtatgaaaatactggatcacatcagctaggaaaatggttaattcattatcatttccctaatcttttgttttaataatccatgtggtt |
133 |
Q |
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||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
2820236 |
tccccagattcttgtatgaaaatagtggatcacatcagctaagaaaatggttaattcattatcattcccctaatcttttgttttgataatccatgtggtt |
2820335 |
T |
|
| Q |
134 |
ttattacatgatgacacatttggtagttctttttaggtacgcgctggttttgatcgcggtgtttaatgtctcggatttaacatccagat-atattcccct |
232 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||| |
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| T |
2820336 |
ttattgaatgatgacacatttggtagttctttttaggtacacgctggttttgatcgcagtgtttaatgtctcggatttaatatccagatcatattcccct |
2820435 |
T |
|
| Q |
233 |
cctcaaattcctgaagttggagtcaagaaagtgcttactcgctgcagttctttctagattactattgatccctgcattttacttcacagcaaaatatggt |
332 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
2820436 |
cctcaaattcctgaagttggaatcaagaaagtgcttactcgcagcaattctttctagattactactgatcccagcattttacttcacagcaaaatatggt |
2820535 |
T |
|
| Q |
333 |
gaccaaggatggatgattatgcttgtttctttcttaggactaacaaatgg |
382 |
Q |
| |
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||||||||||||||||| ||||| ||||| |||||||||||||||||||| |
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| T |
2820536 |
gaccaaggatggatgatcatgctcgtttcgttcttaggactaacaaatgg |
2820585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 239 - 349
Target Start/End: Complemental strand, 2814915 - 2814805
Alignment:
| Q |
239 |
attcctgaagttggagtcaagaaagtgcttactcgctgcagttctttctagattactattgatccctgcattttacttcacagcaaaatatggtgaccaa |
338 |
Q |
| |
|
||||||||||||||| || |||||| | ||| | | ||| |||||||||||| | |||||||| ||||||||||| |||||||||||||||||||| |
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| T |
2814915 |
attcctgaagttggaatctagaaagggattattggttgctactctttctagattcttgttgatcccagcattttactttgcagcaaaatatggtgaccaa |
2814816 |
T |
|
| Q |
339 |
ggatggatgat |
349 |
Q |
| |
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|| |||||||| |
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| T |
2814815 |
ggttggatgat |
2814805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 221 - 345
Target Start/End: Complemental strand, 2820712 - 2820590
Alignment:
| Q |
221 |
atatattcccctcctcaaattcctgaagttggagtcaagaaagtgcttactcgctgcagttctttctagattactattgatccctgcattttacttcaca |
320 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||| || |||||| ||||| | | ||| |||||||||||| | |||||||| |||| |||||||| |
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| T |
2820712 |
atatattctgctcatcaaattcctgaagttggaatccagaaagggcttattggttgccactctttctagattcttgttgatcccaacatt--acttcaca |
2820615 |
T |
|
| Q |
321 |
gcaaaatatggtgaccaaggatgga |
345 |
Q |
| |
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|||||||||||||||||||| |||| |
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| T |
2820614 |
gcaaaatatggtgaccaaggttgga |
2820590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 429
Target Start/End: Original strand, 2835755 - 2835903
Alignment:
| Q |
281 |
tctttctagattactattgatccctgcattttacttcacagcaaaatatggtgaccaaggatggatgattatgcttgtttctttcttaggactaacaaat |
380 |
Q |
| |
|
|||||||||||| | ||| | || ||||| ||||| || ||||||||||||||||||||||||||||| | || || ||||| ||||| || ||| |
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| T |
2835755 |
tctttctagattcttgttggttccagcattctactttactgcaaaatatggtgaccaaggatggatgatctttctcacctcattcttgggactcaccaat |
2835854 |
T |
|
| Q |
381 |
ggctatctcactgtttgtgtgctaacagttgcaccaaaaggttacaagg |
429 |
Q |
| |
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|| || |||||||| ||||| | ||||| ||||||| ||||||||||| |
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| T |
2835855 |
ggatacctcactgtgtgtgttatgacagtggcaccaagaggttacaagg |
2835903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 221 - 430
Target Start/End: Original strand, 1428414 - 1428623
Alignment:
| Q |
221 |
atatattcccctcctcaaattcctgaagttggagtcaagaaagtgcttactcgctgcagttctttctagattactattgatccctgcattttacttcaca |
320 |
Q |
| |
|
||||||||||||| |||||||| |||| ||||| || |||||| | ||| | | ||| |||||||||||| | |||||||| ||||||||||||||| |
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| T |
1428414 |
atatattcccctcatcaaattcttgaaattggaatctagaaagggtttattggttgctactctttctagattcttgttgatcccagcattttacttcaca |
1428513 |
T |
|
| Q |
321 |
gcaaaatatggtgaccaaggatggatgattatgcttgtttctttcttaggactaacaaatggctatctcactgtttgtgtgctaacagttgcaccaaaag |
420 |
Q |
| |
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|||||||||||||||||||| |||||||| | ||||| |||| ||| |||||||| ||||| ||||||||||||||||| ||||| | ||| |||| |
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| T |
1428514 |
gcaaaatatggtgaccaaggttggatgatcctacttgtatcttacttgggactaaccaatggttatctcactgtttgtgtatacacagtggtacctaaag |
1428613 |
T |
|
| Q |
421 |
gttacaaggt |
430 |
Q |
| |
|
|||||||||| |
|
|
| T |
1428614 |
gttacaaggt |
1428623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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