View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19934_low_20 (Length: 390)
Name: NF19934_low_20
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19934_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 14977605 - 14977972
Alignment:
| Q |
19 |
aattggacactcaaatacaaatgaagagatttatggtgttttgtctttggtgttttggtctgttacattagttcctttggttaaatatgtgttcatagtg |
118 |
Q |
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| T |
14977605 |
aattggacactcaaatacaaatgaagagatttatggtgttttgtctctggtgttttggtctgttacattagttcctttggttaaatatgtgttcatagtg |
14977704 |
T |
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| Q |
119 |
ttaagagctgatgataatggtgaaggaggcacttttgcactttactctttgttgtgtagatatgctaaagttaattctcttcctaattgtcaattggctg |
218 |
Q |
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| T |
14977705 |
ttaagagctgatgataatggtgaaggaggcacttttgcactttactctttgttgtgtagatatgctaaagttaattctcttcctaattgtcaattggctg |
14977804 |
T |
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| Q |
219 |
atgaagaattgtctgagtataagaaagatggttgtggtggtggtgtttcaaatgttaaaggatttgcctttaggcttaagtctacacttgagaaaaggaa |
318 |
Q |
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| T |
14977805 |
atgaagaattgtctgagtataagaaagatggttgtggtggtggtgtttcaaatggtaaaggatttgcctttaggcttaagtctacacttgagaaaaggaa |
14977904 |
T |
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| Q |
319 |
ggttttgcagaagtttttgcttgttcttgctttaattggaacttgtatggttattggtgatgatgtcc |
386 |
Q |
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| T |
14977905 |
ggttttgcagaagtttttgcttgttcttgctttgattggaacttgtatggttattggtgatggtgtcc |
14977972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 81 - 376
Target Start/End: Original strand, 15027763 - 15028058
Alignment:
| Q |
81 |
ttacattagttcctttggttaaatatgtgttcatagtgttaagagctgatgataatggtgaaggaggcacttttgcactttactctttgttgtgtagata |
180 |
Q |
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| T |
15027763 |
ttacattagtttctttggttaaatatgtgttcatagtgttaagagctgatgataatggtgaaggaggcacttttgcacttaactctttgttgtgtagata |
15027862 |
T |
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| Q |
181 |
tgctaaagttaattctcttcctaattgtcaattggctgatgaagaattgtctgagtataagaaagatggttgtggtggtggtgtttcaaatgttaaagga |
280 |
Q |
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| T |
15027863 |
tgctaaagttaattctcttcctaattgtcaattggctgatgaagaattgtctgagtataagaaagatggttgtggtggtggtgtttcaaatggtaaagga |
15027962 |
T |
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| Q |
281 |
tttgcctttaggcttaagtctacacttgagaaaaggaaggttttgcagaagtttttgcttgttcttgctttaattggaacttgtatggttattggt |
376 |
Q |
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| T |
15027963 |
tttgcctttaggcttaagtctacacttgagaaaaggaaggttttgcagaagtttttgcttgttcttgctttgattgaaacttgtatggttattggt |
15028058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 1807952 - 1808117
Alignment:
| Q |
20 |
attggacactcaaatacaaatgaagagatttatggtgttttgtctttggtgttttggtctgttacattagttcctttggttaaatatgtgttcatagtgt |
119 |
Q |
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|||| ||| ||| ||||||||||||| || | |||||| |||||||| ||||||||| | | || || |||| | | |||||||||||||| |||| |
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| T |
1807952 |
attgaacattcagatacaaatgaagaaatctttggtgtattgtcttttgtgttttggacactaactttgattccacttctgaaatatgtgttcattgtgt |
1808051 |
T |
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| Q |
120 |
taagagctgatgataatggtgaaggaggcacttttgcactttactctttgttgtgtagatatgcta |
185 |
Q |
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| T |
1808052 |
tgagagctgatgataatggtgaaggagggacttttgctttgtactctttgctatgtagacatgcta |
1808117 |
T |
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