View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19934_low_22 (Length: 383)
Name: NF19934_low_22
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19934_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 33 - 186
Target Start/End: Complemental strand, 1080854 - 1080701
Alignment:
| Q |
33 |
ttttccataaaaaatttagctaaaaacagctcatgctggactccatcaacttccaaattcacatcctcaagagatgcgaaacactttggcacaacagcag |
132 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1080854 |
ttttccataaaaaatttagctaaaaacagctcatgctggactccatcaacttccaaattcacatcctcaagagatgcgaaacattttggcacaacagcag |
1080755 |
T |
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| Q |
133 |
aattcaaacgctcttccgcaaattcatgtattccctaatgataaaccaaccatc |
186 |
Q |
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| T |
1080754 |
aattcaaacgctcttccgcaaattcatgtattccctaatgataaaccaaccatc |
1080701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 241 - 362
Target Start/End: Complemental strand, 1080646 - 1080525
Alignment:
| Q |
241 |
ctaattaccaaccttgagagttagtatcttaagaactggtgatttttgaagtaaagctaagagaacatcaacactaacgaagtaaacatctaacttcgtc |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||| |
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| T |
1080646 |
ctaattaccaaccttgagagttagtatcttaagaactggtgatttttgaagtaaagctaagagaacatcaacactaacgaagaaaacctctaagttcgtc |
1080547 |
T |
|
| Q |
341 |
aacattgaaaatacacatagtt |
362 |
Q |
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|||||||||||||||||||||| |
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| T |
1080546 |
aacattgaaaatacacatagtt |
1080525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 1086645 - 1086617
Alignment:
| Q |
19 |
gtagcatcatacaattttccataaaaaat |
47 |
Q |
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| T |
1086645 |
gtagcatcatacaattttccataaaaaat |
1086617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 5130939 - 5131106
Alignment:
| Q |
19 |
gtagcatcatacaattttccataaaaaatttagctaaaaacagctcatgctggactccatcaacttccaaattcacatcctcaagagatgcgaaacactt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||| |||||||||||||||||||| |
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| T |
5130939 |
gtagcatcatacaattttccataaaaaatttagctaaaaacagctcatgctggactccatcaatgtcaaatttcacatcttcaagagatgcgaaacactt |
5131038 |
T |
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| Q |
119 |
tggcacaacagcagaattcaaacgctcttccgcaaattcatgtattccctaatgataaaccaaccatc |
186 |
Q |
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| T |
5131039 |
tggcacaacagcagaattcaaacgctcttccgcaaattcatgtattccctaatgataaaccaaccatc |
5131106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 241 - 359
Target Start/End: Original strand, 5131161 - 5131279
Alignment:
| Q |
241 |
ctaattaccaaccttgagagttagtatcttaagaactggtgatttttgaagtaaagctaagagaacatcaacactaacgaagtaaacatctaacttcgtc |
340 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5131161 |
ctaattgccaaccttgagagctagtatcttaagaactggtgatttttgaagtaaagctaagagaacatcaacactaacgaagtaaacatctaagttcgtc |
5131260 |
T |
|
| Q |
341 |
aacattgaaaatacacata |
359 |
Q |
| |
|
||||||||||||||||||| |
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| T |
5131261 |
aacattgaaaatacacata |
5131279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 13019155 - 13019021
Alignment:
| Q |
19 |
gtagcatcatacaattttccataaaaaatttagctaaaaacagctcatgctggactccatcaacttcc---aaattcacatcctcaagagatgcgaaaca |
115 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||| ||||||| ||| | |||||||||| | ||| ||||||| | |||||||||||||| |
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| T |
13019155 |
gtagcatcatacaattttgcataaaaaatttagctaaacgcagctcaagctcgtctccatcaacgcctgaaaaagtcacatcatggagagatgcgaaaca |
13019056 |
T |
|
| Q |
116 |
ctttggcacaacagcagaattcaaacgctcttccg |
150 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
13019055 |
ctttggcacaacagcagaattcaaacgctcttccg |
13019021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 13018930 - 13018876
Alignment:
| Q |
241 |
ctaattaccaaccttgagagttagtatcttaagaactggtgatttttgaagtaaa |
295 |
Q |
| |
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||||||| ||||||||||| |||| ||| |||| |||||||||||||||||||| |
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| T |
13018930 |
ctaattatcaaccttgagaactagtgtctgaagagctggtgatttttgaagtaaa |
13018876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 360
Target Start/End: Complemental strand, 581210 - 581092
Alignment:
| Q |
242 |
taattaccaaccttgagagttagtatcttaagaactggtgatttttgaagtaaagctaagagaacatcaacactaacgaagtaaacatctaacttcgtca |
341 |
Q |
| |
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||||||| |||||||||| ||| ||| ||||| |||| |||||||| || | |||||||| |||||||||||||||| ||| || || | |||| |
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| T |
581210 |
taattacgaaccttgagaacaagtgtctcgagaaccggtgccttttgaagcaaggttaagagaatatcaacactaacgaagccaacctccaaatgggtca |
581111 |
T |
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| Q |
342 |
acattgaaaatacacatag |
360 |
Q |
| |
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|||||| |||||||||||| |
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| T |
581110 |
acattggaaatacacatag |
581092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 8318156 - 8318099
Alignment:
| Q |
21 |
agcatcatacaattttccataaaaaatttagctaaaaacagctcatgctggactccat |
78 |
Q |
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|||||||||| |||||||||||||||||| ||||| |||| ||||||| | |||||| |
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| T |
8318156 |
agcatcataccattttccataaaaaatttggctaagaacatttcatgcttggctccat |
8318099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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