View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19934_low_23 (Length: 380)
Name: NF19934_low_23
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19934_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 16 - 371
Target Start/End: Original strand, 37236799 - 37237154
Alignment:
| Q |
16 |
gtttgaatatacagcaaaagaaggtgacgattatgatttaattgcaaatacttattacgcaagtttgacaactgttgagttattgaaaaagttcaacagt |
115 |
Q |
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| T |
37236799 |
gtttgaatatacaacaaaagaaggagacgattatgatttaattgcaaatacttattacgcaagtttgacaactgttgagttattgaaaaagttcaacagc |
37236898 |
T |
|
| Q |
116 |
tatgatccaaatcatatacctgttaaggctaagattaatgtcactgtaaactgttcttgtgggaatagccagatttcaaaagattatggcttgtttgtta |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37236899 |
tatgatccaaatcatatacctgttaaggctaagattaatgtcactgtaatttgttcatgtgggaatagccagatttcaaaagattatggcttgtttgtta |
37236998 |
T |
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| Q |
216 |
cctatccactcaggtctgacgatactcttcagaagattgcaaaccaatctaatcttgatgaagggttgatacagaaatacaattctggtgccaatttcag |
315 |
Q |
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| T |
37236999 |
cctatccactcaggtctgatgatactcttgcgaaaattgcgaccaaagctggtcttgatgaagggttgatacaaaatttcaatcaagatgccaatttcag |
37237098 |
T |
|
| Q |
316 |
caaaggaagtgggatagtgttcattccaggaagaggcatgtattttgtcatattct |
371 |
Q |
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| T |
37237099 |
cataggaagtgggatagtgttcattccaggaagaggtatgtattttctcattttct |
37237154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 371
Target Start/End: Original strand, 37229881 - 37230236
Alignment:
| Q |
16 |
gtttgaatatacagcaaaagaaggtgacgattatgatttaattgcaaatacttattacgcaagtttgacaactgttgagttattgaaaaagttcaacagt |
115 |
Q |
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| T |
37229881 |
gtttgaatatacaacaaaagaaggagacgattatgatttaattgcaaatacttattatgcaagtttgacaactgttgagttattgaaaaagttcaacagc |
37229980 |
T |
|
| Q |
116 |
tatgatccaaatcatatacctgttaaggctaagattaatgtcactgtaaactgttcttgtgggaatagccagatttcaaaagattatggcttgtttgtta |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37229981 |
tatgatccaaatcatatacctgttaaggctaagattaatgtcactgtaatttgttcgtgtgggaatagccagatttcaaaagattttggcttgtttgtta |
37230080 |
T |
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| Q |
216 |
cctatccactcaggtctgacgatactcttcagaagattgcaaaccaatctaatcttgatgaagggttgatacagaaatacaattctggtgccaatttcag |
315 |
Q |
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||||||||||||||||||| ||||||||| ||| ||||| | | || || ||||||||||||||||| |||| || | |||| | |||||||||||| |
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| T |
37230081 |
cctatccactcaggtctgatgatactcttgcgaaaattgcgaccaaagctgatcttgatgaagggttgttacaaaatttcaatcaagatgccaatttcag |
37230180 |
T |
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| Q |
316 |
caaaggaagtgggatagtgttcattccaggaagaggcatgtattttgtcatattct |
371 |
Q |
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| T |
37230181 |
caaaggaagtgggatagtgttcattccaggaagaggtatgtattttctcattttct |
37230236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 358
Target Start/End: Original strand, 37308982 - 37309323
Alignment:
| Q |
17 |
tttgaatatacagcaaaagaaggtgacgattatgatttaattgcaaatacttattacgcaagtttgacaactgttgagttattgaaaaagttcaacagtt |
116 |
Q |
| |
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|||||||| ||||||||||||| || ||||||||| ||||| ||| ||||||| ||||||||||| || |||||| | |||||||||||||| |||| |
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| T |
37308982 |
tttgaatactcagcaaaagaaggagatacttatgatttgattgccaattcttattatgcaagtttgactacagttgagcttttgaaaaagttcaatagtt |
37309081 |
T |
|
| Q |
117 |
atgatccaaatcatatacctgttaaggctaagattaatgtcactgtaaactgttcttgtgggaatagccagatttcaaaagattatggcttgtttgttac |
216 |
Q |
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|||||| | |||||||||||| |||||||||| ||||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
37309082 |
atgatcaagatcatatacctgctaaggctaaggttaatgtaactgtcaattgttcttgtgggaacagccagatttcaaaagattatggcttgtttattac |
37309181 |
T |
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| Q |
217 |
ctatccactcaggtctgacgatactcttcagaagattgcaaaccaatctaatcttgatgaagggttgatacagaaatacaattctggtgccaatttcagc |
316 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
37309182 |
ctatccactcagaactgatgatactcttcagaagattgcaaaccaatctaatcttgatgaagggttgatacagagttacaattctggtgtcaatttcagc |
37309281 |
T |
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| Q |
317 |
aaaggaagtgggatagtgttcattccaggaagaggcatgtat |
358 |
Q |
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| T |
37309282 |
aatggaagtgggatagtgttcattccaggaagaggtatgtat |
37309323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 33596682 - 33596573
Alignment:
| Q |
47 |
tatgatttaattgcaaatacttattacgcaagtttgacaactgttgagttattgaaaaagttcaacagttatgatccaaatcatatacctgttaaggcta |
146 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
33596682 |
tatgatttaattgcaaatacttattatgcaagtttgacaactgttgaggttttgaaaaagttcaacagttataatccaaaacatatacctgttaaggcta |
33596583 |
T |
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| Q |
147 |
agattaatgt |
156 |
Q |
| |
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|| ||||||| |
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| T |
33596582 |
aggttaatgt |
33596573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 308 - 373
Target Start/End: Complemental strand, 33596560 - 33596495
Alignment:
| Q |
308 |
aatttcagcaaaggaagtgggatagtgttcattccaggaagaggcatgtattttgtcatattcttc |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||| |
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| T |
33596560 |
aatttcagcaaaggaagtgggatagtgttcattccaggaagaggtatgtattttctcattttcttc |
33596495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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