View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19934_low_26 (Length: 360)
Name: NF19934_low_26
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19934_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 20 - 354
Target Start/End: Original strand, 10724060 - 10724402
Alignment:
| Q |
20 |
catcctgcagggaatcctacatatataccaacaaaatagttgtattactttcattttgtgccttctgtagtatagtaattcttctattgccttgacaagg |
119 |
Q |
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| T |
10724060 |
catcctgcagggaatcctacatatataccaacaaaatagttgtattactttcattttgtgccttctgtagtatagtaattcttctattgccttgacaagg |
10724159 |
T |
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| Q |
120 |
gattgagaaagattatctacatttgggaaaatgttcaaactttcaaatgaaataagcacaatttggtcctttttcttgtacaatttgccaccatcagttt |
219 |
Q |
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| T |
10724160 |
gattgagaaagattatctacatttgggaaaatgttcaaactttcaaatgaaataagcacaatttggtcctttttcttgtacaatttgccaccatcagttt |
10724259 |
T |
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| Q |
220 |
tatcaactaatg------aagttgcaaataatgaagttgcaaaatcggcaaaaccaacattatcggg--gttatcattcactcaaaccttgtgatgatac |
311 |
Q |
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| T |
10724260 |
tatcaactaaagatggaaaggatgcaaataatgaagttgcaaaatcggcaaaaccaacattatcggggtgttatcattcactcaaaccttgtgatgatac |
10724359 |
T |
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| Q |
312 |
agtcattaaaaacatcaataaaatgcacgccgcttcatctcac |
354 |
Q |
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| T |
10724360 |
agtcattaaaaacatcaataaaatgcacgccgctccatttcac |
10724402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 11418163 - 11418226
Alignment:
| Q |
122 |
ttgagaaagattatctacatttgggaaaatgttcaaactttcaaat-gaaataagcacaatttg |
184 |
Q |
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| T |
11418163 |
ttgacaaagattatttacatttagaaaaatgttcaaactttcaaatagaaataagcacaatttg |
11418226 |
T |
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