View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19934_low_29 (Length: 332)
Name: NF19934_low_29
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19934_low_29 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 27 - 332
Target Start/End: Complemental strand, 39363592 - 39363287
Alignment:
| Q |
27 |
tctcttttccaataagtaataaaattagcacttctccgttttatttaattcatactgtgtgtggggtccctttaatgtttcaaatatattggatagtcga |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39363592 |
tctcttttccaataagtaataaaattagcacttctccgttttatttaattcatactgtgtgtggggtccctttaatgtttcaaatatattggatagtcga |
39363493 |
T |
|
| Q |
127 |
tggttcggaacaatgattgatgtacttaagttacttgggtctacttactaaaacaaaagtctgaagttacctctgcgtttctacatttcttctcaattgt |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39363492 |
tggttcggaacaatgattgatgtacttaagttacttgggtctacttactaaaacaaaagtctgaagttacctctgcgtttctacatttcttctcaattgt |
39363393 |
T |
|
| Q |
227 |
aaaaaatcattttggagtgagtattgagagagttaggtttgataataccagagattacttgaatcacaagttattctttttgtccaaagagggtattatt |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39363392 |
aaaaaatcattttggagtgagtattgagagagttaggtttgataataccaaagattacttgaatcacaagttattctttttgtcaaaagagggtattatt |
39363293 |
T |
|
| Q |
327 |
attcac |
332 |
Q |
| |
|
|||||| |
|
|
| T |
39363292 |
attcac |
39363287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 326
Target Start/End: Complemental strand, 29442761 - 29442532
Alignment:
| Q |
99 |
taatgtttcaaatatattggatagtcgatggttcggaacaatgattgatg----tacttaagttacttgggtctacttactaaaacaaaagtctgaagtt |
194 |
Q |
| |
|
||||||| |||||||||| | |||||||| ||| | |||| | ||||||| |||| ||||| ||||||| | || | |||||||||||||||| | |
|
|
| T |
29442761 |
taatgttgcaaatatattagttagtcgattgtttgtaacattcattgatgattgtactcgagttaattgggtcaatatattgaaacaaaagtctgaagct |
29442662 |
T |
|
| Q |
195 |
acctctgcgtttctacatttcttctcaattgtaaaaaatcattttggagtgagtattgagagagttaggtttgataataccagagattacttgaatcaca |
294 |
Q |
| |
|
|||| ||||||||||||||||||||| || |||| || || |||||||||||| ||| ||| | || ||||||| ||| || |||||| | |||| |
|
|
| T |
29442661 |
accta---gtttctacatttcttctcaatggttaaaactcggttcggagtgagtattaagatagtcatgtctgataatgccaaagcttactttattcacg |
29442565 |
T |
|
| Q |
295 |
agtt--attctttttgtccaaagagggtattatt |
326 |
Q |
| |
|
|||| ||||||||||| |||| ||||||||||| |
|
|
| T |
29442564 |
agtttaattctttttgt-caaaaagggtattatt |
29442532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 50058416 - 50058716
Alignment:
| Q |
1 |
gtgtgaacttgctaaacacaagcatgtctcttttccaataagtaataaaattagcacttctccgttttatttaattcatactg-tgtgtggggtcccttt |
99 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| | |||||||| || || |||||||| ||||||||||||||| ||| |||||||||||||| |
|
|
| T |
50058416 |
gtgtgaacttgctaaacacaagcgtgtctcttttcctgtcagtaataatatcagtacttctccattttatttaattcatgctgatgtgtggggtccctca |
50058515 |
T |
|
| Q |
100 |
aatgtttcaaatatattggatagtcgatggttcggaacaatgattgatg----tacttaagttacttgggtctacttactaaaacaaaagtctgaagtta |
195 |
Q |
| |
|
|||||| ||||||||| | |||||||||||| | |||| | || |||| || | ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
50058516 |
aatgttgcaaatatatcaggtagtcgatggtttgtaacattcatagatgattgtagtcgagttacttgggtctatttactaaaacaaaagtctgaagtta |
50058615 |
T |
|
| Q |
196 |
cctctgcgtttctacatttcttctcaattgtaaaaaatcattttggagtgagtattgagagagttaggtttgataataccagagattacttgaatcacaa |
295 |
Q |
| |
|
||||| |||||||||||| || |||| || |||| ||| |||||||| |||||| ||||||| |||| ||||||| ||| |||||| || |||||| | |
|
|
| T |
50058616 |
cctct--gtttctacatttttttgcaatggttaaaactcagtttggagtaagtattaagagagtcaggtctgataatgccaaagattattttaatcacga |
50058713 |
T |
|
| Q |
296 |
gtt |
298 |
Q |
| |
|
||| |
|
|
| T |
50058714 |
gtt |
50058716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 28095017 - 28094795
Alignment:
| Q |
1 |
gtgtgaacttgctaaacacaagcatgtctcttttccaataagtaataaaattagcacttctccgttttatttaattcatactg-tgtgtggggtcccttt |
99 |
Q |
| |
|
|||||||||| |||| |||||| ||||||||||| | | |||||||||||||| | ||||| ||||||||||||||| || |||||| ||||||| |
|
|
| T |
28095017 |
gtgtgaacttactaagcacaagtatgtctctttttctgtcagtaataaaattagtatgtctccattttatttaattcattatgatgtgtgaggtccctca |
28094918 |
T |
|
| Q |
100 |
aatgtttcaaatatattggatagtcgatggttcggaacaatgattgatg----tacttaagttacttgggtctacttactaaaacaaaagtctgaagtta |
195 |
Q |
| |
|
|||||| ||||||||| | | ||||||||| | |||| | ||||||| || | ||||||||||||||| |||||||||||| ||||||||| || |
|
|
| T |
28094917 |
aatgttgcaaatatatcaggtgctcgatggtttgtaacattcattgatgattgtagtcgagttacttgggtctatttactaaaacaacagtctgaagata |
28094818 |
T |
|
| Q |
196 |
cctctgcgtttctacatttcttc |
218 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
28094817 |
cctctgtgtttctacatttcttc |
28094795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 41894768 - 41894883
Alignment:
| Q |
1 |
gtgtgaacttgctaaacacaagcatgtctcttttccaataagtaataaaattagcacttctccgttttatttaattcatactg-tgtgtggggtcccttt |
99 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||| || | ||||||||||| || |||| ||||||||||||| ||||||| | |||||||||||| | | |
|
|
| T |
41894768 |
gtgtgaacttgctaaacacaagcgtgtacctttttcagtcagtaataaaatgagtacttttccgttttatttagttcatacagatgtgtggggtccttct |
41894867 |
T |
|
| Q |
100 |
aatgtttcaaatatat |
115 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
41894868 |
aatgttccaaatatat |
41894883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 2412343 - 2412458
Alignment:
| Q |
1 |
gtgtgaacttgctaaacacaagcatgtctcttttccaataagtaataaaattagcacttctccgttttatttaattcatac-tgtgtgtggggtcccttt |
99 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||| || | ||||||||||| || |||| ||| ||||||||| ||||||| |||||||||||| | | |
|
|
| T |
2412343 |
gtgtgaacttgctaaacacaagcgtgtaactttttcagtcagtaataaaatgagtacttttccattttatttagttcatacaaatgtgtggggtccttct |
2412442 |
T |
|
| Q |
100 |
aatgtttcaaatatat |
115 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
2412443 |
aatgttccaaatatat |
2412458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University