View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19934_low_3 (Length: 559)
Name: NF19934_low_3
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19934_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 167; Significance: 3e-89; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 370 - 544
Target Start/End: Complemental strand, 3500848 - 3500674
Alignment:
| Q |
370 |
tctttgatgatggaacacttgtaaaaatatcggatggagtggagttcactgtcaaggatggtcaggacatacacactttattatagtctcttctattttt |
469 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3500848 |
tctttgatgatggaacactcgtaaaaatatcggatggagtggagttcacagtcaaggatggtcaggacatacacactttattatagtctcttctattttt |
3500749 |
T |
|
| Q |
470 |
catttccagggagtggagttcacatgagtgtccaaatgagggatctgttgtgaaatgtaaatcatcattgatgct |
544 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3500748 |
catttccagggagtggagttcacatgagtgtccaaatgagggatctgttgtgaaatgtaaatcatcattgatgct |
3500674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 260 - 372
Target Start/End: Complemental strand, 3501017 - 3500905
Alignment:
| Q |
260 |
gatactgaaggacggggaggaaagggaaacccctaaggatcctgatattgttttaggtatacacgttcatacttctaacatatttaatattttgctagat |
359 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3501017 |
gatactgaaggatggggaggaaagggaaacccctaaggatcctgatattgttttaggtatacatgttcatacttctaacatatttaatattttgctagat |
3500918 |
T |
|
| Q |
360 |
gattttgtcatct |
372 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3500917 |
gattttgtcatct |
3500905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 431
Target Start/End: Original strand, 8626927 - 8626985
Alignment:
| Q |
373 |
ttgatgatggaacacttgtaaaaatatcggatggagtggagttcactgtcaaggatggt |
431 |
Q |
| |
|
||||||||||||| |||||||||| ||| ||||| ||||||||||| || ||||||||| |
|
|
| T |
8626927 |
ttgatgatggaacgcttgtaaaaaaatctgatggggtggagttcacagtgaaggatggt |
8626985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 504 - 541
Target Start/End: Original strand, 8627518 - 8627555
Alignment:
| Q |
504 |
aatgagggatctgttgtgaaatgtaaatcatcattgat |
541 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8627518 |
aatgagggagctgttgtgaaatgtaaatcatcattgat |
8627555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 493 - 549
Target Start/End: Complemental strand, 3495621 - 3495565
Alignment:
| Q |
493 |
atgagtgtccaaatgagggatctgttgtgaaatgtaaatcatcattgatgctgatga |
549 |
Q |
| |
|
||||| |||||||||| ||| ||||||| ||||||||||||| ||||||||| |||| |
|
|
| T |
3495621 |
atgagcgtccaaatgatggagctgttgtaaaatgtaaatcatgattgatgctaatga |
3495565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 538
Target Start/End: Complemental strand, 2891522 - 2891483
Alignment:
| Q |
499 |
gtccaaatgagggatctgttgtgaaatgtaaatcatcatt |
538 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
2891522 |
gtccaaatgagggagctcttgtgaaatgtaaatcatcatt |
2891483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 538
Target Start/End: Original strand, 3143740 - 3143779
Alignment:
| Q |
499 |
gtccaaatgagggatctgttgtgaaatgtaaatcatcatt |
538 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
3143740 |
gtccaaatgagggagctcttgtgaaatgtaaatcatcatt |
3143779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 434
Target Start/End: Complemental strand, 3496116 - 3496055
Alignment:
| Q |
373 |
ttgatgatggaacacttgtaaaaatatcggatggagtggagttcactgtcaaggatggtcag |
434 |
Q |
| |
|
|||||||||||||||| ||| || ||| ||||||||||||||||| || ||||| |||||| |
|
|
| T |
3496116 |
ttgatgatggaacactagtagcaaaatctgatggagtggagttcacagtgaaggagggtcag |
3496055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 434
Target Start/End: Complemental strand, 14389688 - 14389627
Alignment:
| Q |
373 |
ttgatgatggaacacttgtaaaaatatcggatggagtggagttcactgtcaaggatggtcag |
434 |
Q |
| |
|
|||||||||||||||| ||| || ||| ||||||||||||||||| || ||||| |||||| |
|
|
| T |
14389688 |
ttgatgatggaacactagtagcaaaatctgatggagtggagttcacagtgaaggagggtcag |
14389627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 534
Target Start/End: Original strand, 2794658 - 2794694
Alignment:
| Q |
498 |
tgtccaaatgagggatctgttgtgaaatgtaaatcat |
534 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||| |
|
|
| T |
2794658 |
tgtccaaatgagggagctcttgtgaaatgtaaatcat |
2794694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University