View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19934_low_30 (Length: 312)

Name: NF19934_low_30
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19934_low_30
NF19934_low_30
[»] chr4 (2 HSPs)
chr4 (1-176)||(37811563-37811738)
chr4 (175-304)||(37811761-37811890)
[»] chr1 (2 HSPs)
chr1 (45-143)||(52356185-52356283)
chr1 (175-299)||(52357166-52357287)
[»] chr5 (3 HSPs)
chr5 (1-143)||(17209043-17209179)
chr5 (175-304)||(17209436-17209565)
chr5 (1-83)||(17200105-17200181)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 37811563 - 37811738
Alignment:
Q  1 tgggcgtcaagacgaagaacaggagctttggttctcttattcaactgaggaattttcttcagcttctctgataacaatttctgaatttgtaaagccttct 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37811563 tgggcgtcaagacgaagaaaaggagctttggttctcttattcaactgaggaattttcttcagcttctctgacaacaatttctgaatttgtaaagccttct 37811662  T
Q  101 tagcctttgctaaggcatcactactagagaggcttccaagtttatcaccaaatctcctacgttccttctttgcttc 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37811663 tagcctttgctaaggcatcactactagagaggcttccaagtttatcaccaaatctcctacgttccttctttgcttc 37811738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 175 - 304
Target Start/End: Original strand, 37811761 - 37811890
Alignment:
Q  175 tccaattccctatcctcgctatgttctctatctttcctcttatgcaaggagtatcgagtttccactgaatactccatctcttcatcgcgtttcgatttag 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37811761 tccaattccctatcctcgctatgttctctatctttcctcttatgcaaggagtatcgagtttccactgaatactccatctcttcatcgcgcttcgatttag 37811860  T
Q  275 acctacctttgctaccctctctttcatctc 304  Q
    ||||||||| ||||||||||||||| ||||    
T  37811861 acctaccttagctaccctctctttcgtctc 37811890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 45 - 143
Target Start/End: Original strand, 52356185 - 52356283
Alignment:
Q  45 ctgaggaattttcttcagcttctctgataacaatttctgaatttgtaaagccttcttagcctttgctaaggcatcactactagagaggcttccaagttt 143  Q
    |||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52356185 ctgaggaattttcttcagcttcgctgacaacaatttctgcatttgtaaagccttcttagcctttgctaaggcatcactactagagaggcttccaagttt 52356283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 175 - 299
Target Start/End: Original strand, 52357166 - 52357287
Alignment:
Q  175 tccaattccctatcctcgctatgttctctatctttcctcttatgcaaggagtatcgagtttccactgaatactccatctcttcatcgcgtttcgatttag 274  Q
    |||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||    |||| |||||  ||| ||||||||||||| ||||||||||    
T  52357166 tccaattcccgatcctcgctatgttctctgtctttcctcttatgcgaggagtatcgc---tccaatgaatcttccctctcttcatcgcgcttcgatttag 52357262  T
Q  275 acctacctttgctaccctctctttc 299  Q
    |||||||||||||||||||||||||    
T  52357263 acctacctttgctaccctctctttc 52357287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 17209043 - 17209179
Alignment:
Q  1 tgggcgtcaagacgaagaacaggagctttggttctcttattcaactgaggaattttcttcagcttctctgataacaatttctgaatttgtaaagccttct 100  Q
    ||||||||||||||||||| |||||| ||||||   ||      |||||||||||||||| |||||| |||||| |||||||| ||||||||||||||||    
T  17209043 tgggcgtcaagacgaagaaaaggagccttggttggttt------ctgaggaattttcttcggcttctatgataataatttctgcatttgtaaagccttct 17209136  T
Q  101 tagcctttgctaaggcatcactactagagaggcttccaagttt 143  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  17209137 tagcctttgctaaggcatcactactagagaagcttccaagttt 17209179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 175 - 304
Target Start/End: Original strand, 17209436 - 17209565
Alignment:
Q  175 tccaattccctatcctcgctatgttctctatctttcctcttatgcaaggagtatcgagtttccactgaatactccatctcttcatcgcgtttcgatttag 274  Q
    ||||||||||  ||||||||||||||||||||||||||||||||| |||||||| | | || |||||||| |||||||||||| | | | |||||| ||     
T  17209436 tccaattcccggtcctcgctatgttctctatctttcctcttatgcgaggagtattgcggtttcactgaatcctccatctcttcgtagtgcttcgatatat 17209535  T
Q  275 acctacctttgctaccctctctttcatctc 304  Q
    ||||||||||| ||||||||||||| ||||    
T  17209536 acctacctttgttaccctctctttcgtctc 17209565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 17200105 - 17200181
Alignment:
Q  1 tgggcgtcaagacgaagaacaggagctttggttctcttattcaactgaggaattttcttcagcttctctgataacaatttctg 83  Q
    |||||||||||||||||||||||||| ||||||   ||      ||||||||||||||||||||||||||| || ||||||||    
T  17200105 tgggcgtcaagacgaagaacaggagccttggttggttt------ctgaggaattttcttcagcttctctgacaataatttctg 17200181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University