View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19934_low_31 (Length: 309)
Name: NF19934_low_31
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19934_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 10 - 295
Target Start/End: Complemental strand, 475055 - 474774
Alignment:
| Q |
10 |
agaagaagatataagaggggtcaggttacatgactattgaagaatatatatataagctagcgatgcttatcgacataaataaatacctgcaaaatgagcc |
109 |
Q |
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| T |
475055 |
agaagaagatataagaggggtcaggttacatgactattgaagaatatata----agctagcgatgcttatcgacataaataaatacctgcaaaatgagcc |
474960 |
T |
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| Q |
110 |
aaagtgaccaggcaacactacttaccaaaagatacacacatccaagcaaccaactctcatcactaacggaggttatggccatgatagattttgtaggtag |
209 |
Q |
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| T |
474959 |
aaagtgaccaggcaacactacttcccaaaagatacacacatccaagcaaccaactatcatcactaccggaggttatggccatgatagattttgtaggtag |
474860 |
T |
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| Q |
210 |
tatgttttctgcatttagtagctttggacccttcaacaatgcgatagacaatgctccacaaacacatattaatgtccctactattt |
295 |
Q |
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| T |
474859 |
tatgttttctgcatttagtagctttggacccttcaacaatgctatagacaatgctccacaaacacatattaatgtccctactattt |
474774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 295
Target Start/End: Complemental strand, 446941 - 446730
Alignment:
| Q |
84 |
ataaataaatacctgcaaaatgagccaaagtgaccaggcaacactacttaccaaaagatacacacatccaagcaaccaact---ctcatcactaacggag |
180 |
Q |
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| T |
446941 |
ataattaaatacctgcaaaatgagccaagttgaccctccaacagtacttcccaaaagaattagacatccaagaaaccagttgttctcatcacttgtcgag |
446842 |
T |
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| Q |
181 |
gttatggccatgatagattttgtaggtagtatgttttctgcatttagtagctttggacccttcaacaatgcgatagacaatgctccacaaacacatatta |
280 |
Q |
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| T |
446841 |
gttgtggccatgattgattttgaagata---tattttctgcatttaaaagttttggaccctttaacaatgcgatggacattgctccacaaacacatatta |
446745 |
T |
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| Q |
281 |
atgtccctactattt |
295 |
Q |
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| T |
446744 |
ttgttcccactattt |
446730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 138 - 295
Target Start/End: Complemental strand, 467897 - 467740
Alignment:
| Q |
138 |
aagatacacacatccaagcaaccaactctcatcactaacgga---ggttatggccatgatagattttgtaggtagtatgttttctgcatttagtagcttt |
234 |
Q |
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|||| ||| |||||||||||||||| |||||||||| | | |||| |||||||||| ||||||| | ||||| || |||||||||||||| ||| |
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| T |
467897 |
aagagacagacatccaagcaaccaattctcatcacttcctaataaggttgtggccatgattgattttgaa---agtatcttatctgcatttagtagtttt |
467801 |
T |
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| Q |
235 |
ggacccttcaacaatgcgatagacaatgctccacaaacacatattaatgtccctactattt |
295 |
Q |
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| T |
467800 |
ggacccttcaacaatgcaattgacactgctccacttacacatataattgtccccactattt |
467740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 92 - 295
Target Start/End: Complemental strand, 480324 - 480121
Alignment:
| Q |
92 |
atacctgcaaaatgagccaaagtgaccaggcaacactacttaccaaaagatacacacatccaagcaaccaactctcatcactaacggaggttatggccat |
191 |
Q |
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||||||||||||||||||||| |||||| ||||||| || | |||||| | | |||||||||||||||| |||||||| || ||| | | ||||| |
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| T |
480324 |
atacctgcaaaatgagccaaattgaccaagcaacacagtttcctaaaagacaaagacatccaagcaaccaattctcatcattactagagagtcttgccat |
480225 |
T |
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| Q |
192 |
gatagattttgtaggtagtatgttttctgcattta---gtagctttggacccttcaacaatgcgatagacaatgctccacaaacacatattaatgtccct |
288 |
Q |
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||| || |||| || || |||| |||||||||| ||||||||||||||||||||||||| ||||| | |||||||| | |||||| | |||||| |
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| T |
480224 |
gattgactttgaagtta---tgttctctgcatttattagtagctttggacccttcaacaatgcaatagatactgctccacttatacatatcactgtcccc |
480128 |
T |
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| Q |
289 |
actattt |
295 |
Q |
| |
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||||||| |
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| T |
480127 |
actattt |
480121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 250
Target Start/End: Complemental strand, 455667 - 455507
Alignment:
| Q |
90 |
aaatacctgcaaaatgagccaaagtgaccaggcaacactacttaccaaaagatacacacatccaagcaaccaactctcatcactaacggaggttatggcc |
189 |
Q |
| |
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||||||||||||||| ||||||| ||| | ||||||||||||| |||| ||| | | ||| |||| ||||||| |||||||||| | ||||| ||| | |
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| T |
455667 |
aaatacctgcaaaattagccaaattgagccggcaacactacttcccaacagaaagagacaaccaatcaaccaattctcatcactttccaaggttgtggtc |
455568 |
T |
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| Q |
190 |
atgatagattttgtaggtagtatgttttctgcatttagtagctttggacccttcaacaatg |
250 |
Q |
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| T |
455567 |
atcattgtttttgaaggcatcttatgatctgcatttagtagttttggacccttcaataatg |
455507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 90 - 245
Target Start/End: Original strand, 27491398 - 27491550
Alignment:
| Q |
90 |
aaatacctgcaaaatgagccaaagtgaccaggcaacactacttaccaaaagatacacacatccaagcaaccaactctcatcactaacggaggttatggcc |
189 |
Q |
| |
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||||||||||||||| ||||||| |||||||||||||| ||| | |||||| || |||||||||||||||| |||||||||| | ||||| || | |
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| T |
27491398 |
aaatacctgcaaaataagccaaactgaccaggcaacacagcttccaaaaagaaccaaacatccaagcaaccaattctcatcacttcctaaggttgtgcca |
27491497 |
T |
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| Q |
190 |
atgatagattttgtaggtagtatgttttctgcatttagtagctttggacccttcaa |
245 |
Q |
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| T |
27491498 |
atgattgattttgaag---ttatgctttctgcatttagcagctttggacccttcaa |
27491550 |
T |
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